Gene Bamb_6488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6488 
Symbol 
ID4315392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp1165552 
End bp1166880 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content63% 
IMG OID638154332 
ProductO-antigen polymerase 
Protein accessionYP_778366 
Protein GI115361229 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCTACA TCACGCTCAT CGCGCTGCTT TTCAGCATCA CGAACTTCAT CCCGGTCAGT 
GCGATCGGCT TCGCGCCGAT TTGCCTCTGC GCGTGGCGCT TGTTCGACCG GCGTTATCCG
CCGTTCGTGA CCTGCTTGTC CGTCTTCGGG CTGTTGGCGT TGGGCTCGAC GCTGCTTTAC
GACCCGCAAG CATTGCTGTC GTACGATTTC TACCGCCACG ACGGCAACTT CTTCGTGTCC
TATGCGCCGA TTCTTGCCGG TTGCCTGTAT TCGCATGATC TGGATCTCGA CAAGGCGCTG
AGACGCTTCT TCGTGTTTGC CGTGCTCGCG AACCTGCCGC CCTATGCCGT CTATGTCGCG
CAAAACGGCC TGTTGGCGAT ATTTTCGAAC GCCAACGACT CGTTCGGCAG CTACTTCATT
GCCCGTAACG CCGCCGGCGG TTTCCTCGCG ATGCTGTTCT GTCTCGGCTT GGCCTGCTAC
GTGAAGCGCC ACGACAAGCT CGTGCTCGGG TTGCTCGTCC TCAACGCGAT GTTCGTGTTT
TCCACCTACA GTCGCGGATC GATGCTGGGG ATGGCGACCG CAATCGCGTA TCTATTGCTG
GGCCGCAAGC GCTGGTTGGT GGCGGTGCTG ATGGCCGCGG CAGTGGCGTT CTCCTTCGGC
GCGGCCTGGA ACCACACGCA ATCGGCAGTC GACTACATGG CCCACGAGCA CACGGTGCGG
GATGTGGACG CGAAAACGGC CAACGTGGAC GTGCGCTTCG GATGGCTGTG GCCGCGGGCA
TTGGCGTATT TCGAGGCAAG CCCGATCATC GGGATGGGTG TCGGGTCGTT CGACGACGAA
GTGCATGACG TCGTGAACTA TTTCGGTGTG GTCGGCCAGC CGCGGGACGT CACCGTGCTC
CATACCGATG CGCATGCACA CAATTCCTAC CTGCATATCG CCGCGGAGCT GGGCGTGATC
GGTCTCGCGC TGATGCTCGC CTTCTATTGG CATCTCGTCA AATGGGCAGT GGAAGGCGCC
GCATCGACGC TGCCTGCGCG CCGCAGCAGT GTCGGCGCGT ATACGTTCGT CGAGTTGTCA
TCGGTGTGCC TGCTCGCGAT GGGCACGACG GAGCACCGCC TGACCACGCC GTCGAATGTC
CTGATTCTTG CGCTGGTCGT GTCGTTGCTG CTGTCGTGGC GCGTGCGGCG CGCGGGTGGG
GCAGCAAAAG TGGCGCGTGC CGCTCCGCGC GGCGTGGCGC TTACGGCAGC GGCGTCACGA
CGAGATAGCC AAGGCACGGG CACGGTTTGT CGTCAGCGCC GGGTCGCGGC TCCGGTACGT
AGAAGCTGA
 
Protein sequence
MVYITLIALL FSITNFIPVS AIGFAPICLC AWRLFDRRYP PFVTCLSVFG LLALGSTLLY 
DPQALLSYDF YRHDGNFFVS YAPILAGCLY SHDLDLDKAL RRFFVFAVLA NLPPYAVYVA
QNGLLAIFSN ANDSFGSYFI ARNAAGGFLA MLFCLGLACY VKRHDKLVLG LLVLNAMFVF
STYSRGSMLG MATAIAYLLL GRKRWLVAVL MAAAVAFSFG AAWNHTQSAV DYMAHEHTVR
DVDAKTANVD VRFGWLWPRA LAYFEASPII GMGVGSFDDE VHDVVNYFGV VGQPRDVTVL
HTDAHAHNSY LHIAAELGVI GLALMLAFYW HLVKWAVEGA ASTLPARRSS VGAYTFVELS
SVCLLAMGTT EHRLTTPSNV LILALVVSLL LSWRVRRAGG AAKVARAAPR GVALTAAASR
RDSQGTGTVC RQRRVAAPVR RS