| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6408 |
|---|
| Symbol | |
|---|
| ID | 4315312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1032894 |
|---|
| End bp | 1033919 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638154252 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_778286 |
|---|
| Protein GI | 115361149 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.565487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACG ACCCGGTGCA CCTCGGTCGG TCCATTACTC GTTCGCAAGT CGATCCTACG
TTGGGCGCGA CGCCATTCAA CCGGCGCTTC ACGTGCAATG ACGTCGACAG CCATGCGGAA
TGTACGCACG GCTGGTCCAT CCGGCTCGAT CAATTGTCGC CCGGGCCGTT CCAGGGCACG
CTGCACGAAA TTCGTTTCGA CGGCATGCAG TTGCTGCGCG AACGCGTGAA TCGCGCGCTG
CTCAAGCGCG GCGATCAGCG CGCCGGCAGC ACATCATTCA GCATCCCGCT GGAAACCGCG
GGCGCCGGAT ACTGCGGCGG CACGCCGCTG CGCGACAAGG CATTGCTCGT CTCCGGCGGT
ACGTCGCTGC CCGAGCTGCG CACGCCCGAC CATCAGGACG TCGTGCTGCT GACGGTGCCG
ACCGACACGC TGCGCACGCT GGCATGGCTC GCCGATGAAG ACGACGGCGA CTGCACCGGA
ACCTTGTCGA ACGAAACCAG CGTCGTCCGT GTGCCGGCCG CCCGCTACGA CGCGTTGACA
TCCCTGCTGG TGGCCAGCTT CGATGCGGCC GACACGTCCG AGCGCCCGTT CGCGCTGCCG
CAAGCGCGCA GGACGCTACG CGACGCCATT CTGGTCGAGC TCGTCGACGC GCTGGAAGCA
GCCGGCCGCC CGGTTCGCCT CGATCCGTCC GCGCGCCGCC GCGTCGTCGA GCGCGTGCGC
GAACTCGTCG TCTCGCAGCC CGACGCGCCG CTGACCGTGC TCGACGTGTG CCGCGCGGTG
GGCGCAAGCC GGCGCAAATT GCAGTATTGC TTCGAGGAGA TCCTCGGCAC GCATCCCGCG
TGGTACTTGC GCGTGCTGCG GCTCAACGCC GTGCGCCGCG AACTGCGCGA GCATTCTCCA
TCGAACGCTT CGGTCAGCGA CGTCGCATGC CGCTGGGGCT TCTGGCACCT GAGCCGGTTC
GCGGCGCACT ACCGTGAACT GTTCGGCGAA CTGCCGTCCG ACACGCTCAA ACGCCCATCG
CGATAA
|
|---|
| Protein sequence | MKDDPVHLGR SITRSQVDPT LGATPFNRRF TCNDVDSHAE CTHGWSIRLD QLSPGPFQGT
LHEIRFDGMQ LLRERVNRAL LKRGDQRAGS TSFSIPLETA GAGYCGGTPL RDKALLVSGG
TSLPELRTPD HQDVVLLTVP TDTLRTLAWL ADEDDGDCTG TLSNETSVVR VPAARYDALT
SLLVASFDAA DTSERPFALP QARRTLRDAI LVELVDALEA AGRPVRLDPS ARRRVVERVR
ELVVSQPDAP LTVLDVCRAV GASRRKLQYC FEEILGTHPA WYLRVLRLNA VRRELREHSP
SNASVSDVAC RWGFWHLSRF AAHYRELFGE LPSDTLKRPS R
|
|---|
| |