| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6378 |
|---|
| Symbol | |
|---|
| ID | 4315282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 1009098 |
|---|
| End bp | 1010060 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638154222 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_778256 |
|---|
| Protein GI | 115361119 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.218444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACA ACAATTCCCC CCGCCTGCTG GTAGCGCGAC GGGTCCCCGC CGCCGTGGCC
GCACGCGCCG AAGCCGAATT CCATGCGTAC GTGACGGACG CCGACATGGA TGCGCCGTCC
GTCGTCGAGT TCTGCAATCG CTACGCGACG CCGGCGGTGC TGATAGGCAA GAAATCGGGG
CTGCAGGCCG AGCACATCGC GGCATTGCCG CCGAGCGTGA AGATCATCGC GAACGCGAGC
GCCGGCTACG ACCACCTGGA TGTGGCCGCC GCGCGCGAGC GCGGGATCGT GGTCAGCAAT
GCGCCCGACG CGCTGACCGA CTGCACGGCC GATTTCACGA TGCTGCTGAT GCTGGCCGCG
TGCCGGCGTG CATCGGAGTA CGAGCGCATC GTGCGCGCGG GGTGGGGCAA GTCGTTCGGC
ATGACCGACA TGCTCGGCAC GCGCGTGAAC GGCAAGACGC TCGGGATCGT CGGCTTCGGC
CGGATCGGCC GCGCGGTCGC GCAGCGCGCA CGCGGCTTCG GGATGAAGAT CGTCTATACC
GACAGGCAGC CGGCGCCGCC CGAGGTCGAG GCGGGCGCCC GCTATTGCGC GGATCTCGAC
ACGCTGCTGC CGCAGTGCGA CATCGTCACG CTGCACGTGC CGGGCGGCGG CACGCCGTTG
ATGACGCGCC GCGCGTTCGG CCTGATGCGC GACGGTGCGG TGTTCGTCAA CGCGGCGCGC
GGGAGTCTCG TCGATGAGGA TGCGCTTTAC GACGCGTTGA CGTCGCGTCG GTTGTTCGGC
GCGGGGCTGG ACGTCTATCG GAACGAGCCC GATATCGATC CGCGTTTCGC CGCGCTCGAT
AACGTGTTTC TGTCGCCGCA CATGGCCAGC GCGACGATCG AGACGCGTGA CCAGATGGGT
TTTACCGCGC TCGATAACGT CGCCGCGGTG CTTGACGGAA GGGCGGCGCC GAACGCGGTT
TGA
|
|---|
| Protein sequence | MPDNNSPRLL VARRVPAAVA ARAEAEFHAY VTDADMDAPS VVEFCNRYAT PAVLIGKKSG
LQAEHIAALP PSVKIIANAS AGYDHLDVAA ARERGIVVSN APDALTDCTA DFTMLLMLAA
CRRASEYERI VRAGWGKSFG MTDMLGTRVN GKTLGIVGFG RIGRAVAQRA RGFGMKIVYT
DRQPAPPEVE AGARYCADLD TLLPQCDIVT LHVPGGGTPL MTRRAFGLMR DGAVFVNAAR
GSLVDEDALY DALTSRRLFG AGLDVYRNEP DIDPRFAALD NVFLSPHMAS ATIETRDQMG
FTALDNVAAV LDGRAAPNAV
|
|---|
| |