| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6373 |
|---|
| Symbol | |
|---|
| ID | 4315277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1002096 |
|---|
| End bp | 1004291 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638154217 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_778251 |
|---|
| Protein GI | 115361114 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.324139 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.194055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCCG CCGCCACACA AGCCGCGGCC GGGGAGCCGT GCGCCGCGCA CGGCTGGAAT
CTGCCGCACG GATCGGGTAT CGAAGACGAT CCGTTGCTCG GTTGCCTGCT CGTGCTGACG
CGGCTGTTCG ACCGGCCGGT GGGCGTCGAC ACGCTCGTGG CTGGCCTGCC GCTCGCCGGC
CGGCGCCTCA CGCCCGCCCT GTTCGTGCGG GCCGCGGCGC GCGCCGGCCT GTCGGCCAAA
CTGGCCCGGC GCGCGTTGCC CGACATCCCG GATGCGGTCC TGCCCGCGGT GTTGCTGCTC
AACGACGGCC AGGCCTGCGT GCTGGTTCGC CGCAACGCGT GCGGCACCCT GCAGGTGATC
CTTCCTGAAA CCGGCATCGG CGAGGAAGCC GTCGACGCGG CCGAACTCGC GCAACGCCAT
GCCGGCCACG TGCTGTTCGC GCGCCCGGCC CACCGATTCG ATGCACGCGA CACGGAAAGC
GTCGTGCCGC GCCCGCGCCA CTGGTTCTGG GGCGTGGTCG CGCAATCGTG GCCGATCTAT
GCGGAAGTGA TGCTCGCGTC GACGCTGGTC AATCTTTTCG CGCTGGCGAT GCCGCTGTTC
ACGATGAACG TCTACGACCG CGTCGTGCCG AACCGCGCGC TCGAGACGCT GTGGGCACTG
GCGGCCGGCA TCGTGCTCGT GATCGTGTTC GACGTCGTGA TGCGCACGTT GCGCGGCTAT
TTCATCGACG TCGCCGGCAA GAAGATCGAT GTGATCCTGT CGGCAAACCT GTACGAGAAA
GTACTCGGCA TCCGGATGGC GGCGCGGCCG CCGTCCGTCG GCGGATTCGC TTCGCAGATC
CAGGAATTCG AAGCCGTGCG CGAATTCCTC ACGTCGGCGA CCGCGGCGGC GCTGATCGAC
CTGCCGTTTT CGATCGTGTT CGTCGTGGCG ATGTTCTGGG TCGGCGGCGG GCTCGGCTGG
CTGCCGCTGC TGGCCTTGCC GCTCGTGATC GGCGCGGGCG TGGCCGTGCA GGGGCCGCTC
GCGCGCGCCG TGCAAGCCAG TCAGCGCCAC GCGAGCCAGC GTCAGGCCCT GCTGATCGAA
ACGCTGGTCG GCCTCGAGAC GATCAAGGTC AACGGCGCGG AAGGACCGAT GCAGGCGCGC
TGGGAGCAGA TGCTCGGCGA GATCGCACGG CTCGGGCTCA AGTCGCGCCT GCTGTCGGGT
TGCGCGGTCA ATTTCGCGAT GTTCGCGCAG CAGGCGGCCT ATCTCGCGGT GGTCCTGTGC
GGCGTGTACA TGATCGGCGA CGACCGCCTC ACGACCGGCG GACTGATCGC CTGCACGATC
TTCACCGGCC GCGCGCTCGC GCCGATGGGC CAGGTCGCGT CACTGCTGAC CCGCTACCAC
CAGTCGCGCA GCGCGCTCGC GTCGATCGAC GGCGTGATGA ACCTGCCCGG CGAGCGTCCG
GCCGAGCAGC GCTTCGTCCA TCGGCCGGCA CTCGCCGGCG AGATCGAATT CCGCGACGTC
AGCTTCGCGT ACCCCGGCCA GAGCGGCGTG TCGCTCGAAG GCGTGTCGTT CCGCGTCGCC
GCGGGCGAGC GTGTCGGCAT CATCGGGCGC GTCGGCTCGG GCAAGACCAC GATCGAAAAA
CTCGTCCTCG GTCTCTACCC GCCTTCGTCC GGCAACGTCC TGATCGACGG CGTCGAACTG
CGTCAGTACG ATCCTGCCGC GCTGCGGCGC GGGATCGGTC ACGTGCCGCA GGACGTGATG
CTGTTCAACG GCACCGTGCG CGACAACATC GTGCTGGGCG CGCCGGGCGC GGACGACGAC
GCCGTGTTGC GCGCCGCGCA GGTGTCCGGC GTCGCGGACT TCGTCAACCG GGTGCCGAAC
GGCTTCGACC TCGCGGTTGG CGAACGCGGC GAAGCGTTGT CCGGCGGGCA GCGCCAGGCC
ATCGCCATCG CCCGTGCGAT GCTGCTGTCG CCGCCGGTGC TGTTGCTCGA CGAGCCGAGC
AGCGCGATGG ACAACCGCTC CGAAGAGCTG TTCAAGGCGC GTCTGTCGGC CCAGCTCGCC
GGCCGCACGC TGCTGCTGGT CACGCACCGT CCGTCGCTGC TCACGCTCGT CGACCGCCTG
ATCGTGATGG ATCAGGGCCG CGTCGTCGCT GACGGCCCGA AGGACCAGGT CCTCGCGGCT
CTTGCAGGGA GAAAGCTCCA TGTCGCTGCT GGTTGA
|
|---|
| Protein sequence | MQAAATQAAA GEPCAAHGWN LPHGSGIEDD PLLGCLLVLT RLFDRPVGVD TLVAGLPLAG
RRLTPALFVR AAARAGLSAK LARRALPDIP DAVLPAVLLL NDGQACVLVR RNACGTLQVI
LPETGIGEEA VDAAELAQRH AGHVLFARPA HRFDARDTES VVPRPRHWFW GVVAQSWPIY
AEVMLASTLV NLFALAMPLF TMNVYDRVVP NRALETLWAL AAGIVLVIVF DVVMRTLRGY
FIDVAGKKID VILSANLYEK VLGIRMAARP PSVGGFASQI QEFEAVREFL TSATAAALID
LPFSIVFVVA MFWVGGGLGW LPLLALPLVI GAGVAVQGPL ARAVQASQRH ASQRQALLIE
TLVGLETIKV NGAEGPMQAR WEQMLGEIAR LGLKSRLLSG CAVNFAMFAQ QAAYLAVVLC
GVYMIGDDRL TTGGLIACTI FTGRALAPMG QVASLLTRYH QSRSALASID GVMNLPGERP
AEQRFVHRPA LAGEIEFRDV SFAYPGQSGV SLEGVSFRVA AGERVGIIGR VGSGKTTIEK
LVLGLYPPSS GNVLIDGVEL RQYDPAALRR GIGHVPQDVM LFNGTVRDNI VLGAPGADDD
AVLRAAQVSG VADFVNRVPN GFDLAVGERG EALSGGQRQA IAIARAMLLS PPVLLLDEPS
SAMDNRSEEL FKARLSAQLA GRTLLLVTHR PSLLTLVDRL IVMDQGRVVA DGPKDQVLAA
LAGRKLHVAA G
|
|---|
| |