| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6372 |
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| Symbol | |
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| ID | 4315276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 1000688 |
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| End bp | 1002112 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638154216 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_778250 |
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| Protein GI | 115361113 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.17068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.732434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTGC TGGTTGAACC CGACGGCGCC GGCGCGCCGA CGACGCAACG CATCGCCGCG
CTCAACGCGC TGCGCGCGCG CATCGGCGCC GCGCTGAAGC CGCGCGCCGA CGATACCGCG
TTCATGCGCG AACGCTGCGC GGCCGCGATG GAGGGGCCGC GCTACTTCAC TCACTGGATC
CTGTGGGCGA CGCTCGCGTT CATCGTCATC GCGCTCCTCT GGGCCGCATT CGCCGAAGTC
GACGAAGTCA CTGTCGGGGA AGGCAAGGTG ATTCCGTCCA GCCGTGTGCA GGTGGTGCAG
AACCTGGAGG GCGGGATCGT CTCCGAGATC ATGGTGCGTG TCGGCCAGGT CGTCCAGAAA
GGCCAGCCGC TGATGCGCAT CGACGATACG CGGTTCACGT CGTCGTACAA GGAAGGACAG
GCGAAGGATG CCGCGCTCCT CGCCCGCATC GCGCGGCTGA GCGCCGAAGC GAACGGCGCC
GCGTTCGTCG TGCCGGCCGC CCTGGCGCGC GCGAATCCGG GCCTGCTGGA TGAGGAACGC
TCGCTGTTCG AGTCGCGTCA GCGCGAATTG CAGGCCAATC TCGACGTGCT CAGGCAACAG
GCCGAACAGC ACCGGCAGGA GCTCGCGGAA AAGCGCTCGC GCGAGGGGCA GTTGCAACAC
AGCTACGCGC TCGTCGCGAA GGAGCTGGCG TTGACGAGCC CGCTCGTCGA AAAAGGCGCG
GTATCGGACG TCGAGGTGCT GCGGCTCGAG CGGCAGGCGA CCGACATGAA GGGCGACCTC
GATGCGACGC GGCTCGCGAT GCCGCGGCTG GAAGCCGCCT ATCGCGAGGC GCGCCAGAAA
ATCGACGAAA CGACCGCGCA TTTTCGCGCC GACGCGATGA AGGAACTGAA TCTCGCGCGC
GCCGATCAGT CGGCGCTGAG TGCGGCCAAC GTCGCGCTCG AGGATCGCGT CACGCGCACG
CTCGTGCGTG CGCCGCTGAA AGGGATGATC AAGCAGATCA AGATCAACAC CGTGGGCGGC
GTGATCCAGC CGGGGATGGA CCTGCTGGAA ATCGTGCCGC TCGACGACAC GCTGTTGATC
GAAGCGCGCG TGCGGCCGGC GGACATCGCG TTCCTGCATC CGGGGCAGGA CGCGACGGTC
AAGCTGTCCG CGTACGACTT CTCGATCTAT GGCGGCTTTC CCGCCGTCGT CGAGGACATC
AGCGCCGACA CGATCGTGCC GGACCGTCCC GGCGAGAAAC CGGACAGCTA TTACCGCGTA
CTGGTGCGCA CCCGGCAAAG CAAGCCGAGC GGCCGGAGCC AGCCGGTCGC GATCGTGCCG
GGCATGATCG CGACCGTCGA CATCCGCACC GGGCGCCGAA CCGTATTGCA TTACCTGCTC
AAGCCCGTCA TCAAGACCAA GGAAATGGCG TTGCGCGAGC GCTGA
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| Protein sequence | MSLLVEPDGA GAPTTQRIAA LNALRARIGA ALKPRADDTA FMRERCAAAM EGPRYFTHWI
LWATLAFIVI ALLWAAFAEV DEVTVGEGKV IPSSRVQVVQ NLEGGIVSEI MVRVGQVVQK
GQPLMRIDDT RFTSSYKEGQ AKDAALLARI ARLSAEANGA AFVVPAALAR ANPGLLDEER
SLFESRQREL QANLDVLRQQ AEQHRQELAE KRSREGQLQH SYALVAKELA LTSPLVEKGA
VSDVEVLRLE RQATDMKGDL DATRLAMPRL EAAYREARQK IDETTAHFRA DAMKELNLAR
ADQSALSAAN VALEDRVTRT LVRAPLKGMI KQIKINTVGG VIQPGMDLLE IVPLDDTLLI
EARVRPADIA FLHPGQDATV KLSAYDFSIY GGFPAVVEDI SADTIVPDRP GEKPDSYYRV
LVRTRQSKPS GRSQPVAIVP GMIATVDIRT GRRTVLHYLL KPVIKTKEMA LRER
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