| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6370 |
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| Symbol | |
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| ID | 4315274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 987837 |
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| End bp | 989207 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638154214 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_778248 |
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| Protein GI | 115361111 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.668018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGGA ACTGCCCTCT GCTTGCCGTG CTCGCATTCG CGTCAGCGCT CGCGGGCACC
CCCGCGCCCG CCGCCGCGCA AAGCCTGCAG GAAGCGGTCG AGCAGGCGAT CCGGACCAAC
CCCGAAGTCC TTGCCACGAC ATACAACCGG GAAGCGGCGG ATCAAGGCCT GAAGCAGGCG
CGAGCCGGCT ACTTGCCCCG CGTGGATATC GACGCGGCGA TCGGCAAGGA GCAGCGCGAC
GACGTCGAAA CGCGTCTGCT CGGCCTGAAC CGCACGACGT TCACGCACCG GACGGCCAGC
GTGACGTTGT CGCAAATGCT GTTCGACGGT TTCGCGGTCA GGAGCGAAGT GGCGCGGCAA
CGGGCACGCA TCGACTCGTC CGCGAATCGC GTCGCATCAA CCTCGGAGGA CGTGGCGCTG
CGCGTGGTGG GCGCGTATCT GGAAGTCCTG CGCCGCCAGG AAACGGTCGC CGCCGCCACC
GACAACCTGG AGTCCCACCG CCGGATCCAC GATCAGATCA AGCTGCGCAG CGACCGCGGC
GTCGGCCGGC GCGCCGACCT TTACCAGGCG GAAAGCCGGC TGGCGCTCGC GCAGGACAAC
TTACGATCAG AGCAAAGCAA CCTGAAAGAC GCCGAAGTGG CCTACGCGCG GCTGGTGGGC
GCGCCGCCGA ACGTGCTCGT CAAGCCGGTC GCGCCGGAAG CCACGCTGCC GCCGACGGAA
CGATTCGCGC TGGATACCGC GCTGGCGAAC CACCCGTCCC TCGCGGCCGC CGAGGCGGAC
GTCGCGCAGG CGAATGCGCA CTATGACGCG GCGAAGGCCG CACTCTGGCC GCGCATCGAT
CTGGAGCTGA GCGCGAGCCA TGACCGTGAC GGCGTGCTCG GTCCGACGAA CGACCGCCGC
GTGATGCTGC GTTTGCGCTA CAACCTGTTT CAGGGCGGCG CCGACAAGGC GCATATCGGC
GAAGCGCATG CGCAGATCCG GGAGGCCGAG GAAGACCGCA ACCGCACGCG CCTGGAGATC
GCGGAAGGCG AATCGCACGC CTACAACGCG TACGTCACCG CGCGCGACCG GTTGGTCGTG
CTCAAGCAGT ACGTCGATTC CAGCGCGTCG ACGCGCGAAG CGTACCTGTT GCAGTTCGGC
ATCGGTCAAC GTTCGCTGCT CGACCTGCTC AACGCGGAGA ACGAGTATTA CAGCGCGCGC
ATCGATTACA TCAGCGGCCA GTACGCGGAA GTGGCGAGCG CGTACCGCGT GTTCGCCGGG
ATGGGGCAGT TGCTCGACAC GCTTCACGTC GCGCGCCCGG CGCAGGCGTG GGGTGCCGGC
GGCATGCAGC CGGTGGCCTT CGACCGGCGC GCATTCGATC CCGGCAAATG A
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| Protein sequence | MNRNCPLLAV LAFASALAGT PAPAAAQSLQ EAVEQAIRTN PEVLATTYNR EAADQGLKQA
RAGYLPRVDI DAAIGKEQRD DVETRLLGLN RTTFTHRTAS VTLSQMLFDG FAVRSEVARQ
RARIDSSANR VASTSEDVAL RVVGAYLEVL RRQETVAAAT DNLESHRRIH DQIKLRSDRG
VGRRADLYQA ESRLALAQDN LRSEQSNLKD AEVAYARLVG APPNVLVKPV APEATLPPTE
RFALDTALAN HPSLAAAEAD VAQANAHYDA AKAALWPRID LELSASHDRD GVLGPTNDRR
VMLRLRYNLF QGGADKAHIG EAHAQIREAE EDRNRTRLEI AEGESHAYNA YVTARDRLVV
LKQYVDSSAS TREAYLLQFG IGQRSLLDLL NAENEYYSAR IDYISGQYAE VASAYRVFAG
MGQLLDTLHV ARPAQAWGAG GMQPVAFDRR AFDPGK
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