Gene Bamb_6332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6332 
Symbol 
ID4315236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp936884 
End bp938206 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content67% 
IMG OID638154176 
Productxylose isomerase 
Protein accessionYP_778210 
Protein GI115361073 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2115] Xylose isomerase 
TIGRFAM ID[TIGR02630] xylose isomerase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTATT TCGAACACAT TCCCGCGATT CGTTACGAAG GTCCGCAGTC GGACAACCCG 
CTGGCCTACC ACCATTACGA CGCCGAGAAG CGTGTGCTCG GCAAGACGAT GGCCGAGCAT
CTGCGGATTG CCGTGTGCTA CTGGCACACG TTCGTATGGC CGGGGCACGA CATCTTCGGG
CAGGGCGCAT TCCAGCGGCC CTGGCAGCAA CCCGGCGACG CACTCGAGCG GGCGCGGCTG
AAGGCCGATG CGGCATTCGA ATTCTTCACG AAGCTCGGTA CGCCGTTCTA TACGTTCCAT
GACACGGACG TCGCGCCGGA GGGCGACAGC CTGCGCGAGT ACGCGGCCAA TTTCGCGCGG
ATGGTCGACT ATCTCGGCGA GCGCCAGCAG GCGAGCGGCG TGCGGCTGCT GTGGGGGACC
GCGAACCTGT TCTCGCACCC GCGCTTCGCG GCGGGCGCGG CGACGAACCC GAACCCCGAC
GTGTTCGCGT GGGCCGCGAC CCAGGTGTGC CATGCGCTCG ACGCAACGCA CCGGCTCGGC
GGCGAGAACT ACGTGCTGTG GGGCGGCCGC GAAGGGTACG AGACGCTGCT CAATACCGAC
CTGAAGCGCG AGCGCGACCA GTTCGCGCGC TTCCTGTCGA TGGTCGTCGA GCACAAGCAC
CGGATCGGCT TCAAGGGCGC GCTGCTGATC GAGCCGAAGC CGCAGGAGCC GACCAAGCAC
CAGTACGACT ACGACGTCGC GACCGTGCAC GGCTTCCTCG TGCAGTACGG ACTGCAGAAC
GAGATCCGCG TGAACATCGA GGCGAACCAC GCGACGCTCG CCGGTCATTC GTTCCATCAC
GAGATCGCGA ATGCGTTCGC GCTCGGCGTG TTCGGCAGCG TCGACGCGAA CCGCGGCGAT
CCGCAGAACG GCTGGGACAC CGACCAGTTT CCGAACAGCG TCGAGGAACT GACGCTCGCG
TTCTACGAGA TCCTGCGCCA CGGCGGCTTT ACCACCGGCG GGATGAACTT CGACGCGAAG
GTGCGCCGCC AGAGCGTCGA TCCGGAAGAC CTGTTCTACG GCCATGTCGG CGCGATCGAC
GTGCTTGCGC TCGCGCTCGA ACGCGCGGCG GTGCTGGTCG AGAACGACCG GCTCGACGCG
CTGCGCCGGC AGCGCTACGC GCAGTGGGAC GATGCGTTCG GCCAGAAGAT CCTGTCGGGC
GGCTATACGC TGCAGTCGCT CGCGGACGAC GCGCTCGCGC GCGGCGTGGA CCCGCGGCAT
GCGAGCGGCG CGCAGGAGCG GCTCGAGAAC ATCGTGAACC AGGCGATCTA CGGGCTGCGC
TGA
 
Protein sequence
MSYFEHIPAI RYEGPQSDNP LAYHHYDAEK RVLGKTMAEH LRIAVCYWHT FVWPGHDIFG 
QGAFQRPWQQ PGDALERARL KADAAFEFFT KLGTPFYTFH DTDVAPEGDS LREYAANFAR
MVDYLGERQQ ASGVRLLWGT ANLFSHPRFA AGAATNPNPD VFAWAATQVC HALDATHRLG
GENYVLWGGR EGYETLLNTD LKRERDQFAR FLSMVVEHKH RIGFKGALLI EPKPQEPTKH
QYDYDVATVH GFLVQYGLQN EIRVNIEANH ATLAGHSFHH EIANAFALGV FGSVDANRGD
PQNGWDTDQF PNSVEELTLA FYEILRHGGF TTGGMNFDAK VRRQSVDPED LFYGHVGAID
VLALALERAA VLVENDRLDA LRRQRYAQWD DAFGQKILSG GYTLQSLADD ALARGVDPRH
ASGAQERLEN IVNQAIYGLR