Gene Bamb_6329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6329 
Symbol 
ID4315233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp932981 
End bp934141 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content68% 
IMG OID638154173 
Productarabinogalactan endo-1,4-beta-galactosidase 
Protein accessionYP_778207 
Protein GI115361070 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3867] Arabinogalactan endo-1,4-beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGAC GATCGATGTT GCGCTGGAGT GTCTCGACCG CGGCGCTCGC CTGCGTCGAC 
CTGGCCGGCG CGTTGCCGGC CGTCGCGCAA GGCGTTGCGC GCGGCGCGGG CGGCGTCCCG
TTCGCGATGG GCGCGGACGT GTCGACGCTG CCGGAGCTCG AGGCGCATGG CGCGCAATAC
TTCGACCGTG GGCATCCGCG CGACTGCCTG AAGATCCTGC ACGCGCATGG CGTCGATTCG
ATCCGCATCA AGGTCTGGAA CGATCCCGGC AATCCGGATT TCTTCCCCGC GAACCAGAGC
GATGCGGCCG GCTACAACAA TGCCGCACAC GTCGTGGCAC TCGCGAAGCG TGCGGCCGCG
CTCGGGATGC GCATCCTGAT CGACTTCCAC TACAGCGACT GGTGGGCCGA CCCCGGCAAG
CAATACCCGC CGCATGCCTG GGCCGGCAAG AATCTCGCCG AGACATGCGC GCTGCTGTCG
GCCTATACGA CCGACGTGCT GCGCCAGTTG CAGCGCGCCG GCGTGCGGCC CGAGTGGGTG
CAGATCGGCA ACGAGATCAC CGGCGGCATG CTGTGGCCGC TCGGCCGCTA CGACCAGTGG
GACAACCTCG CGCAGCTGCT GAAGACGGGC CGCGATGCGG TGAAGGCCGT CGATCCGCGC
ATCAAGGTGA TGCTGCACAT CGACAGCGGC GGCGACAACG CGAAAAGCCG CTGGTGGTTC
GACAGCGCGA CGCAGCGCGG CGTGACGTTC GACGTGATCG GCCTGTCGTA TTACCCGCAG
TGGCAAGGCT CGCTCGACGA CCTGCGCAAC AACGCGAACG ACCTCGCGGT GCGCTACGAC
AAGGAGCTGA TCGTCGTGGA AACCGCGTAT CCGTGGACCA CCAGCGACGG CGACTCGGAA
CCGAACGCGA TGACGAACAC GGGCTCGACC GCGTTCCCGC CGTCACCGGC CGGCCAGGCG
CAATTCCTCA CGGCCGTGAC CGACATCGTG AAGGGCGTGC CGGGCAATCG CGGCAAGGGC
GTGTTCTGGT GGGAGCCCGA ATGGATCCCG ACGCCGGGCG TGGGCTGGAA GGTCGGCGCG
GGCGATCAGT GGGACAACAA CACGTGGTTC GACTTCCACG GCAATGCGCT GTCGTCGCTC
GACGCGCTTC GGCGGCGCTG A
 
Protein sequence
MNRRSMLRWS VSTAALACVD LAGALPAVAQ GVARGAGGVP FAMGADVSTL PELEAHGAQY 
FDRGHPRDCL KILHAHGVDS IRIKVWNDPG NPDFFPANQS DAAGYNNAAH VVALAKRAAA
LGMRILIDFH YSDWWADPGK QYPPHAWAGK NLAETCALLS AYTTDVLRQL QRAGVRPEWV
QIGNEITGGM LWPLGRYDQW DNLAQLLKTG RDAVKAVDPR IKVMLHIDSG GDNAKSRWWF
DSATQRGVTF DVIGLSYYPQ WQGSLDDLRN NANDLAVRYD KELIVVETAY PWTTSDGDSE
PNAMTNTGST AFPPSPAGQA QFLTAVTDIV KGVPGNRGKG VFWWEPEWIP TPGVGWKVGA
GDQWDNNTWF DFHGNALSSL DALRRR