| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6292 |
|---|
| Symbol | |
|---|
| ID | 4315196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 886879 |
|---|
| End bp | 888852 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638154136 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_778170 |
|---|
| Protein GI | 115361033 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.260655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA ATCCGCAATA TTCAGGTACC GGCCCGGTGC GCACCCGCAT CGCGCGGGGC
GCGATGATGG CCGCGATCCT CTGTGCAGGA ACGTTGACCG TGTACAGCGC ACTGGCCCAG
GAAGGCGCCG AATCGGCTGC GCTGATGAAG GGCGGCGCCA GCGCGCCGGC CGCCGTCGCG
AAGGGGCCGA TGCAGATGAC GATCAGCATG GCGCCGGCGC CGGCCACCGC GGCCGCCGCA
TCGGCGGCGC CGATGCGCGG ACCGAACTGC GTGGGCGCGG TGCGTGATGC GACCAGCGTC
ACCGTGCCGC TCGGAAAGTC GCTGCTCGTG CCGATGCCGG AGCCGGTGCG CAACCGCACC
ATCGGCAATC CGGCCGTCGC GCAGGCGACG ATGGTGTCGC CGCAGACGCT GTACATCCTC
GGGCTGTCGG TCGGCACGAC CAACATGATC GTGCAGGGCA GGAGCGGCGC ATGCCGCGTG
ATCGACGTGG CGGTCGGCGC GGACGCAGGC GGCCTGCAGT CGTCGCTGCA GCAGCTGATG
CCGGGCGAGC GCGACATTCA CGTGTCGACC GCCGCCGGCA CGATCGTGCT GGCCGGCACC
GTGTCGAACT CGCAGGCCGC GCAGCAGGCC GTGCAGATCG CCCATGCGTA CAGCGACAGC
GCCGGTGAGG GCGCCGGCGG GGCCGGCAAG GGCGCCGGCG TATTGAACAT GCTGGCCGTC
ACGTCGCCGC AGCAGGTGAT GCTCGAGGTG AAGGTCGCCG AAGTGTCGAA GACGCTGATC
AACCAGATGG GCACCGCATT CAACATCCAG GGCGGCTTCG GTTCGTGGAG CGGTGCGTTG
GTCAGCAACC TGCTCGCGGG CGTTGCCAGC GCCGGGATCT TCAACAAGGC GAACAACAAG
CCGTTCAGCG TCGCGGCCGA CGCGCAGAAC ACCGACAACC TCGTCAAGAT CCTCGCGGAG
CCCAACCTCG TGACGATCAG CGGCCAGGAG GCGACGTTCC TTGCCGGCGG CAAGATCTTC
ATCCCGGTAC CGCAGAGCAG CGGCACGGGC ACGTCGTCGA TCACGCTGCA GGAAGAGGAG
TTCGGCGTCG CGCTGAAGTT CACGCCGACG GTGCTCGCGA ACGGCCGGAT CAGCCTGAAG
GTCGCGCCGG AAGTGTCGGA GCTGTCGCAG ACGGGCGTCA CGCTCAGCGC GACGAACATC
GGCGGCACGT CGATCCTGCC GCTGATCACG ACCCGGCGTG CGTCGACGAC GGTCCAGATG
AGCGACGGCG AATCGTTCGC GATCGGCGGG CTGATCAAGG ACAACGCGAG CGGCTCGCTC
AAGGCGATCC CGGGCGTCGG CGAGGTGCCC GTGCTCGGCG CGCTGTTCCG CAGCACGTCG
TTCCAGCAGG ACCGCACCGA GCTGATCTTC CTGATCACGC CGCACCTGGT GAGGCCGCTG
CAGACCGCCG ACGTGCCGTT GCCGACCGAC AGCTTCTCGA AGCCGAGCGA AATCGACGTG
TACGCGACCG GCAACATGGA AGGCCGCAAG GGTGTCCGCA AGGCGACCAT GCAACCGTCG
AACGGCGCGG CACCGCAGAC GCCGGCTTCG GCACCGGCTC CCGCGCCGCA ATCGGCCGCG
CCGGTCGCAC CTGCCGCCGC ACTGCCCGCA CCGCGTGCGC CGCAGCCTGC CCAGGCGCCG
GCGCCGGTGC CGGCCCAGCC GGAGAAGGCC GGCGCTGCAA CGGCCGAGGC CGCGGGGGCG
GTGAACGCCG AGCCGGCGCC TGCCGCGCGG CCGCAGCCAC AAGCGCCCGC GCAACCGCAG
GCCGATGCGG CCGGTGCGGC ACGCATCGCG CGCATCGAAG CCACCGCCGC GCGCCTCGCG
GCGGCCGGCT CCGCCACGCC GGCGAAACCT GCGTCGCGTG CGACGCCCAG CGTGCCGGCC
GCCCATGCGC AGATCGCGCG GGCGAGCGCG GCACCCCAGT CCACCGATCG TTGA
|
|---|
| Protein sequence | MKINPQYSGT GPVRTRIARG AMMAAILCAG TLTVYSALAQ EGAESAALMK GGASAPAAVA
KGPMQMTISM APAPATAAAA SAAPMRGPNC VGAVRDATSV TVPLGKSLLV PMPEPVRNRT
IGNPAVAQAT MVSPQTLYIL GLSVGTTNMI VQGRSGACRV IDVAVGADAG GLQSSLQQLM
PGERDIHVST AAGTIVLAGT VSNSQAAQQA VQIAHAYSDS AGEGAGGAGK GAGVLNMLAV
TSPQQVMLEV KVAEVSKTLI NQMGTAFNIQ GGFGSWSGAL VSNLLAGVAS AGIFNKANNK
PFSVAADAQN TDNLVKILAE PNLVTISGQE ATFLAGGKIF IPVPQSSGTG TSSITLQEEE
FGVALKFTPT VLANGRISLK VAPEVSELSQ TGVTLSATNI GGTSILPLIT TRRASTTVQM
SDGESFAIGG LIKDNASGSL KAIPGVGEVP VLGALFRSTS FQQDRTELIF LITPHLVRPL
QTADVPLPTD SFSKPSEIDV YATGNMEGRK GVRKATMQPS NGAAPQTPAS APAPAPQSAA
PVAPAAALPA PRAPQPAQAP APVPAQPEKA GAATAEAAGA VNAEPAPAAR PQPQAPAQPQ
ADAAGAARIA RIEATAARLA AAGSATPAKP ASRATPSVPA AHAQIARASA APQSTDR
|
|---|
| |