Gene Bamb_6233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6233 
Symbol 
ID4315137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp806469 
End bp809972 
Gene Length3504 bp 
Protein Length1167 aa 
Translation table11 
GC content66% 
IMG OID638154077 
Product2-oxoacid ferredoxin oxidoreductase 
Protein accessionYP_778111 
Protein GI115360974 
COG category[C] Energy production and conversion 
COG ID[COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTAC GCAACGTCTC GCTGGCCGAC AAATACGCGT TGAGCGAGGA TCGCATTTTC 
ATCTCGGGTG CACAGGCCGT CGTACGCATG CTGTTGATGC AGCGCGAGCG CGATCGGCAA
GCCGGGCTGA ATACGGGCGG TTTCGTGTCC GGCTATCGCG GCTCGCCGCT GGGCGGACTC
GACCATCAGC TCTGGAAAGC CGGCAACGCG CTGGCCGCGG CCGATATCGT GTTCCAGCCG
GGCCTCAACG AGGAATTGGC CGCCGCCGCG GTGTGGGGTT CGCAGCAGGC CGAGATGCTC
GGTGAAGGCC GACGCGATGG TGTCTTCGCG CTCTGGTACG GCAAGGGACC GGGCGTCGAT
CGGGCCGGGG ACGTCTTTCG CCACGCCAAT CTCGCGGGCT CATCGAAGCA TGGCGGTGCG
CTGGCGCTGA TGGGCGACGA CCATCTCGCC GAATCGTCGA GCGCGGCGCA TGCCAGCGAA
TTTGCTTTCG CGGATGCCAT GATTCCGATC CTGAATCCGG CCGGCGTGCA GGAGATCATC
GAATACGGGC TGCTTGGCTA CGCGTTATCG CGCTATGCGG GCACCTGGGT GGCCATCAAG
TGCGTGAAGG ACAACATCGA ATCGACCGCG TCGGTGGACC TGTCGACGAG CCGGATCGAT
ATCGTCGTGC CGGATCTGGT GTTGCCGCCG GGCGGATTGA ACATCCGCCG GGAGGTCGAT
GCGCTCGGGC AGGAGGAGCG CATGCTCGTC CACAAGCGTC GCGCGGCCGC CGCCTTCGTC
CACGCCAATC GCCTGAATCG AATCGTGTTC ACGGGCGGCC CGCGCGCCCG GCTCGGCATC
GTCACGACCG GCAAGAGCCA TCTGGATACG CTGCAGGCGT TGCGCGATCT CGGAATCGAC
GCCGCGCGTG CCAACGCGCT GGGCTTGCGG CTGTTCAAGA TCGGCTGCCC GTGGCCGCTG
GACCATGCGC ACGTCGCCGA GTTCGTGCAG GGGCTCGAAT GCGTCGTCGT GGTCGAGGAG
AAGCGGGCGC TCATCGAAAC CCAGCTGCGC GAGCAGCTGT ATGGCACACG TCATTGCATG
GCGATCGTCG GCAAGCACGA CGAGCAGGGG CGAGTGCTGT TTCCGCCGAC CGGTGCGCTG
GATTCGAACC TGATCGGCAT CGCGTTGGGT GAACGCATTC TGGCGTTGTT CGGGCCGTCG
GAAACGATTG CCGCGCGGTT GGCGAGATTG CGCGACGCGT GGGCGGCGCA GCTTGGCGCC
AAGACGCTCG CCGCGCGCGT GCCGCACTTC TGCCCCGGCT GCCCGCACAA TTCGTCGACC
CGGCTTCCCG AGGGCTCGAT CGCAGGTGGT GGAATCGGTT GCCATTTCAT GGCGATGTGG
ATGGATCGCG GGACCATCGG CTTCACCGCG ATGGGCGTGG AGGGTGCGCA GTGGATCGGG
CAGGCCCCGT TCTCGCGGCG CGACCATTTC TTCCAGAATC TCGGGGACGG CACCTACAAT
CATTCGGGAT CGCTGGCGCT GCGATTCGCG CTGGCGGCCG GCGTCAACAT CACCTACAAG
ATCCTGTTCA ACGATGCGGT GGCGATGACG GGAGGCCAGC CGGTCGAGGG CCGGCTGACC
GTCGATGCGA TCGCGCGACA GGTGCATGCG GAAGGCGTCG AGCGCATCGC CGTGGTGAGT
GACGAGCCGG ACAAATACGC GGGCGTGGCG CGGTTTCCCG ACGGCACCAC GGTTCACCAT
CGTGCGGAGC TCGATGCATT GCAACGCGAA TTGCGCAACG TACCGGGTGT GTCGGTCCTG
ATCTACGACC AGACCTGCGC GGCGGAAAAG CGGCGCCGTC GCAAGCGCGG CAAGCTACCC
GATCCCGATC GCCGCGTGCT GATCAACGAA CTGGTATGCG AGGGCTGCGG CGATTGCGGT
GTCGCGTCCA ATTGCGTTGC GATACAGCCG GTCGAAACGG AGTTCGGCCG CAAGCGGCGC
ATCGACCAGT CGAGCTGCAA CAAGGATTTC TCCTGTGTCG ACGCGTTTTG TCCCGCGTTC
GTCACCGTGC ATGGAGCGAA GCCGAAGACC GGTCACGGGG CGCTCGACGG GAGCGAGCCG
ATAGCGGATT TGCCCACACC GGACGAGTAC CCCCTCGACC GCGGGTGGTG CGCGATCGTG
AACGGTGTCG GTGGAACCGG CGTGATCACG ATCGGCGCGG TGCTCGGCAT GGCCGCGCAT
CTGGAGGGCA AGGGCGTCGG CATCATCGAC ATGGCCGGTC TTGCGCAGAA GGGCGGCGCC
GTGCATTCGC ATCTGCGGAT CGCGAGGACG CCGGCCGACG TCGACTGCGT ACATGTCGCA
GCCGGCCAGG CAGATTTCGT TCTCGGTGGG GACCTGGTCG TGACGGGGTC CGGCAAGGTG
CTCGCGACCC TCCGCCGAGG GCATACGCGT TGCCTGGTGA ACACGGCCGA GACCATGCCG
GGCGACTTCA CTCGGTCCGC GGACTTCAGC TTGCCGGCGC AGTCGCTGAA GCATGCGATC
CAGGATGCCG CCGGACCTGA CCAGACCCGC TTCTTCGATG CCACGGCCGC GGCGGTTGCG
CTGTTCGGCG AATCGATCGC GGCGAATATG CTGTTGCTCG GCATGGCCTG CCAGCTCGGG
AGCCTTCCGG TTTCGCCACA GGCAATCGAG AAGGCGATCG AACTGAACGG CGAAGCCGCC
GCGATGAATC TCGCCGCGTT TCGCTGGGGC CGGCGCGCCG CGCATGCACC GGCGTCGGTG
CTCGACGCGA TGTCCAATGT CGAGGCTACC CGCCGCGACA AGCCCGCCAC GACGATCCAC
GAGGTCGTCG AGCGGCGGGC GGCATTCCTG ACCGATTACC AGGATGCGGC CTACGCGCGG
CGCTATCGCG CGCATGTCGA GCGCATACGG GCGGCCGAGG CGTCGGCCGC GCCGGGTTCG
TCCGCCGTGA CCGAGGCGGT GGCGCGCAAC CTGTTCCGGC TCATGGCAAT CAAGGACGAA
TACGAGGTCG CGCGACTGTA TACGGACGGG CGATTCCGCC GGCAACTCGA AACGGAATTC
GATGGTTACG ACCGGCTCGA ATTTCATCTG GCGCCGCCGC TGTTCGCTCG CCGCGATGCG
CAAGGCCGGC CCGTGAAGGT GCGCTATCGG GAATGGATCA CCGCGGCATT CGGGGTGTTG
GCGCGTCTGA AGCGCGTGCG CGGTACGTGG CTGGATGTGT TCGGCCATAC CGCCGAGCGC
CGCATGGAGC GTGCATTGCT CACGCAGTAT GCCGACGATC TCGATCGCGT CGCCGAATTG
ATCGGAGGCG GCCGTATCGA CGCGGCGAGG GAACTCGCAT CGATACCCGA GATGATCCGT
GGCTTCGGGC ACGTGAAGGC CGCGAACGTC GCGCGTGCGA CGGACGCCCG GGCGCGACTG
CTTGAGCGGA TCAATCAACC GGATCAGGCC GCTTCGTCGG AGGCGCCGAA GCGGGTGATC
CCGGTTACGG TGGTGGAAGC CTAG
 
Protein sequence
MTLRNVSLAD KYALSEDRIF ISGAQAVVRM LLMQRERDRQ AGLNTGGFVS GYRGSPLGGL 
DHQLWKAGNA LAAADIVFQP GLNEELAAAA VWGSQQAEML GEGRRDGVFA LWYGKGPGVD
RAGDVFRHAN LAGSSKHGGA LALMGDDHLA ESSSAAHASE FAFADAMIPI LNPAGVQEII
EYGLLGYALS RYAGTWVAIK CVKDNIESTA SVDLSTSRID IVVPDLVLPP GGLNIRREVD
ALGQEERMLV HKRRAAAAFV HANRLNRIVF TGGPRARLGI VTTGKSHLDT LQALRDLGID
AARANALGLR LFKIGCPWPL DHAHVAEFVQ GLECVVVVEE KRALIETQLR EQLYGTRHCM
AIVGKHDEQG RVLFPPTGAL DSNLIGIALG ERILALFGPS ETIAARLARL RDAWAAQLGA
KTLAARVPHF CPGCPHNSST RLPEGSIAGG GIGCHFMAMW MDRGTIGFTA MGVEGAQWIG
QAPFSRRDHF FQNLGDGTYN HSGSLALRFA LAAGVNITYK ILFNDAVAMT GGQPVEGRLT
VDAIARQVHA EGVERIAVVS DEPDKYAGVA RFPDGTTVHH RAELDALQRE LRNVPGVSVL
IYDQTCAAEK RRRRKRGKLP DPDRRVLINE LVCEGCGDCG VASNCVAIQP VETEFGRKRR
IDQSSCNKDF SCVDAFCPAF VTVHGAKPKT GHGALDGSEP IADLPTPDEY PLDRGWCAIV
NGVGGTGVIT IGAVLGMAAH LEGKGVGIID MAGLAQKGGA VHSHLRIART PADVDCVHVA
AGQADFVLGG DLVVTGSGKV LATLRRGHTR CLVNTAETMP GDFTRSADFS LPAQSLKHAI
QDAAGPDQTR FFDATAAAVA LFGESIAANM LLLGMACQLG SLPVSPQAIE KAIELNGEAA
AMNLAAFRWG RRAAHAPASV LDAMSNVEAT RRDKPATTIH EVVERRAAFL TDYQDAAYAR
RYRAHVERIR AAEASAAPGS SAVTEAVARN LFRLMAIKDE YEVARLYTDG RFRRQLETEF
DGYDRLEFHL APPLFARRDA QGRPVKVRYR EWITAAFGVL ARLKRVRGTW LDVFGHTAER
RMERALLTQY ADDLDRVAEL IGGGRIDAAR ELASIPEMIR GFGHVKAANV ARATDARARL
LERINQPDQA ASSEAPKRVI PVTVVEA