Gene Bamb_6222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6222 
Symbol 
ID4315126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp792351 
End bp796265 
Gene Length3915 bp 
Protein Length1304 aa 
Translation table11 
GC content67% 
IMG OID638154066 
Productbeta-ketoacyl synthase 
Protein accessionYP_778100 
Protein GI115360963 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3321] Polyketide synthase modules and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.19899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCATT CTTCTTGCAG CGAGAACGGT ATGGACAGGT CAACTACACA CGCGGAACGG 
ATCGCCATCA TCGGCATGTC GTGCCGCTTT CCGGGTGGCG CGTCCTGTGC GTCGAGCTAT
TGGACGCTTC TGAATTCCGG CCGTACGGCG ATTCGGGAAA CCCCGCGCGA GCGGTTCGAT
ATCGACGCGT TCTACTCGCC GGATCCCGCT GAACCCGGCA CCACCTATTC GCGCGTGGCC
GGCTACGTCG ACGATCCGTT CTGCTTCGAC CGCGGGCTGT TCCGCACGTC GGCGGCCGAG
GCGATCGAGA TGGATCCGCA GCAGCGCTGG ATGCTGGAAC TGGCCTGGGA AGCGCTCGAG
AACGCAGGGT TTGCGCCCGG TCAATTGCGC GGCAAGAATG TCGGCGTGTT CATGACGACC
GGCGAAGCCG ATTATGGCCG GCGTACCGTG TGGTCCGGCG ATCCCGGAAA AATCACCACG
TATTCGAAGC TCGGCAACCT GCGCGCAATG GCGCCCGGGC GCGTCGCGCA CATCCTGGGC
TTGAGCGGGC CCGCGATCTT CGTCGACACC ACCTGCTCGT CGTCGCTCGT CGCGATCCAT
CTTGCCGCGC AGAGCCTTCA GGCCGGCGAG TGCGACGTGG CGATCGCGGG CGGTGTGAAC
CTGATCCTCG GGCCGGAGGA AACGATCGGC GTCGCGCGAC TTCAGGCGAT GTCCGTGTCC
GGTCAGTGTC GCCCGTTCGA CGCGAACGCC GACGGCTACA TTCGCGGCGA AGGCGGTGGC
GCGCTCGTCA TGAAGCGGCT GGGCGACGCA CGCACGCACG GTGATCGTAT CGACGCGGTG
CTGGTCGGTT CCGCCGTCAA CAGCGACGGC GCGAGCAATG GCCTCACCGC GCCCAACGGC
GCGGCGCAGG AAGCCGTGAT TCGTCGCGCG ATGGCGCGTG CGGGCGTGCG CCCGGAAGCG
GTCGCCTACG TGGAAGCGCA TGGCACGGGT ACGGCACTGG GAGACCCGAT CGAGCTTTCC
GCGCTGCGCA ACGTGTATGC GCGCGCCGTC ACGCGCGACA AGCCGATTCT CGTGGGCTCC
GTGAAGTCGC AACTCGGACA TCTGGAAGGT GCGGCGGGCA TGGCGGGTTT CATCAAGGCG
ATGCTGATTC TGCGTCATCG CCAGGTGCCC GCACAGGTGA ATTTCGCGAC GCCGAATCCG
CGCTTTCACT GGGAAGGCGC GCAACTCGAG ATTCCGCGTG ACGGCATGCC GCTGGGCGAC
GGCAATGCGT TCGTCGGCGT GAGTGGCTTC GGCATCACCG GCACCAACGT CCATATGATT
CTCGCCGAGC CGGACGCGGC GCCGGATACC GCCGCGCAGG TCGCTCGCGA ACGCGTGCTG
ACGCTGTCGG GACGCTCGCC GCAAGCGCGC CGGCGTGCCG CATCCGCGTG GCGCGCATGG
CTCGCTGACA CCCCCGCGCC GATGCGCGAT GCGTGCCACA CGGCGAGCGT GCGGCGCGAT
CATTTCGATC ATCGCGTCGC GCTGGTCGGG ACGACGAAAG CGGATTTCGT TGCCGCACTC
GATGCCTTTC TCGCCGAGGA CCCGACGGGA CACTGGCATG CCGGCGAGCA ACCGCGCAAG
CCGCGTCTCG CGTTTCTCAT CCCCGGTCAA GGGGCATGGC AACCCGGTAT CGGGCGCAAT
CTCTGCGAAG ACAACGTCCT GTTCCGCAAA CACGCGGATG CGTGTCTGGG CCAGCTCGAC
GCCGATACGG CACGCGAGGT GCTCGATGCG ATCGTCGGCC GGACCGCCGA AGCGGTGCGC
CATCATCCCG GGCAACTCGC GCATTTCGTC GTGTGCTATG CGCTGGCGCG TACCTGGATG
GATCTCGGCG TGCAGCCCGA TCTGCTGATC GGGCATTCGT TGGGTGAGCA TGTAGCCGCC
GTGATCGGCG GCGTGATGTC GGTCGCCGAG GGCCTGAAGG CGGTCGAAGC GCGCGGCCGC
CTGTTCGATA CGGCGACGCC GGCAGGCGCG ATGCTCGCTG TCGCCGCGAG CGTGGATGAA
CTCGCCGCGC GCTTCGCGTT CGGCACGGAC TTGTTCGTGG CAGGCATCAA CGGGCCGGAG
CAAACCGTCG TGAGCGGCAC GCAGGCGGCG ATCACGCGGG TTCAGGACGC GATGGTCGCG
GCCGGCAAGC GTGTGTCGTT GCTCAAGACC TACGGCACGC CGGGCCATTC GCCGATGCTG
CGTTCGATGC GCGAAGCGTT CCGGCAGGCA CTCGAACCGC TGACGCTGGC GGCGCCCGCG
ATCCCGATCG TCTCCACACT CACCGGCGCG CTCGCGACAG ACGCGATCGC GAGTGTCGAG
CATTGGCTGG ATCTCGTGGA GCAGCCGGTG CGCTTTCATG AAGCGTTGCT CGCGGCGTCC
GACGGCAAGA CGATCTTCGT CGAAGTGGGG CCCGGCGCGG CGCTGTCGAA GCTCGCGCGC
GCGGCCGCGG GCGGCGACTG GCAATGTGCG GTCTCTTCGC TTGCCGATGG GCCGGACGGC
GATGAAGAAA CGGAGTCGAC CGGCTTCGCG CATGCGTGCG CACGCCTCTA CAGCATCGGG
CAGAAGATTG CGTGGCGCAA ACTCTACGGC AACGCGCCGC GGCCTGCCGA AGCGCCGGGC
TATCCGTTCG AGCGCGATCG CTTCGAATTG CCGTTCCCGG AGCATGTGCT TGCGGCTTCC
GCGCAAGGCG GTACGCAGCA TCGGCGCGAC ATCGCGTCGG GCGAGGTGCC GCTGCAACAC
GCTTCGCACG TGGCGGAGAT TGGCACTGAC ATCGCGAGCG TTGACGTTGA GCAACTGCTC
GCGACACTCC GCACCATCGC GGCGGCCGTC ACGCCGGATA GCGTGACGCT GGCCGACGAT
CTTTCACTCG TCAGTCAGGG CCTCGATTCG TTGGCGTTGA CGGAATTGCG CGTGCGCCTG
CATCAGCACT TCGGCAGGAT GCCGCCGATT TCCATGCTCG CACGCGGTGC ATCGCTATCG
ACGCTGGCTC GGTGGTTCGG CGCATCGTCG GGCACTACAC CGATTCAGGA ACCCGTATCG
AGCGACACGC AGAAAGCGGC CGATGCACCG GGCGACCACG GATTGCTCGT CACGCTGCGC
AATGGCGCGG GGCCGCTCGT CGCACTGGTG CATCCGGTGG GCGGCAACGT GCTCTGTTAT
CAGGATCTGG CCAACGGCTG GCCGGGCGAT CCGACCATCG TCGCGATTCG CCATCCGTAT
GCGGACCAGG ACCGCCCGCC TGCGTATCTG TCGATCGCGC AATTGGCGTC GCGTTATCGC
GCGGCGTTGC TTGCCGCACA TGGCACGCTG CCCGATGTGC TCGGCGGCTG GTCGTTCGGC
GGCATTGTCG CGCACGAAAT GGCGGCGCAG TGGGAAGCGG AGGGCAGGAC CGCGCCGCCG
CTGGTGATCG TCGATACCCC GCTCCATGAA GGCGAATTCG CGACGCGGCT GCGCGCGCTT
GCCGGCGATT TCGTCAATGA GGACGCCACG CAGGTCGTCG AAGCGTGGCT CGCCGATCCA
CGCTTCGACA CGATGCTCGA TCGCGACTTC TACCTGGCTG ACGTGCGGCG CCGCGCGCAT
CCCGCCACGT TCGCCCACAT CTCGCGGCTG CATGCCGTGA GCGCGGTGGC GCTCGCGCGT
CACCGGCCCC ACCAGGTGCG CACGCGAATC GACTACGCGC TCGCCAATCG CAACGCGGGC
GGCATGTCCG GTACGCAGGT GACGCAGTAT CTGCGGCGGC TCACGGGCGG CAGCGTCGCG
GTGAGCGTGT TCGACGACGA TCACAACTCG ATCGTGCGTG AGCCCTCCGC GCGCCGCGTC
GCGGCTTTCC TCGATGGCAG TCCGGACGCC ACGCGTGTCG GGTTCGAGCC GCTTGCGCAG
GAGACGCCCG CATAG
 
Protein sequence
MKHSSCSENG MDRSTTHAER IAIIGMSCRF PGGASCASSY WTLLNSGRTA IRETPRERFD 
IDAFYSPDPA EPGTTYSRVA GYVDDPFCFD RGLFRTSAAE AIEMDPQQRW MLELAWEALE
NAGFAPGQLR GKNVGVFMTT GEADYGRRTV WSGDPGKITT YSKLGNLRAM APGRVAHILG
LSGPAIFVDT TCSSSLVAIH LAAQSLQAGE CDVAIAGGVN LILGPEETIG VARLQAMSVS
GQCRPFDANA DGYIRGEGGG ALVMKRLGDA RTHGDRIDAV LVGSAVNSDG ASNGLTAPNG
AAQEAVIRRA MARAGVRPEA VAYVEAHGTG TALGDPIELS ALRNVYARAV TRDKPILVGS
VKSQLGHLEG AAGMAGFIKA MLILRHRQVP AQVNFATPNP RFHWEGAQLE IPRDGMPLGD
GNAFVGVSGF GITGTNVHMI LAEPDAAPDT AAQVARERVL TLSGRSPQAR RRAASAWRAW
LADTPAPMRD ACHTASVRRD HFDHRVALVG TTKADFVAAL DAFLAEDPTG HWHAGEQPRK
PRLAFLIPGQ GAWQPGIGRN LCEDNVLFRK HADACLGQLD ADTAREVLDA IVGRTAEAVR
HHPGQLAHFV VCYALARTWM DLGVQPDLLI GHSLGEHVAA VIGGVMSVAE GLKAVEARGR
LFDTATPAGA MLAVAASVDE LAARFAFGTD LFVAGINGPE QTVVSGTQAA ITRVQDAMVA
AGKRVSLLKT YGTPGHSPML RSMREAFRQA LEPLTLAAPA IPIVSTLTGA LATDAIASVE
HWLDLVEQPV RFHEALLAAS DGKTIFVEVG PGAALSKLAR AAAGGDWQCA VSSLADGPDG
DEETESTGFA HACARLYSIG QKIAWRKLYG NAPRPAEAPG YPFERDRFEL PFPEHVLAAS
AQGGTQHRRD IASGEVPLQH ASHVAEIGTD IASVDVEQLL ATLRTIAAAV TPDSVTLADD
LSLVSQGLDS LALTELRVRL HQHFGRMPPI SMLARGASLS TLARWFGASS GTTPIQEPVS
SDTQKAADAP GDHGLLVTLR NGAGPLVALV HPVGGNVLCY QDLANGWPGD PTIVAIRHPY
ADQDRPPAYL SIAQLASRYR AALLAAHGTL PDVLGGWSFG GIVAHEMAAQ WEAEGRTAPP
LVIVDTPLHE GEFATRLRAL AGDFVNEDAT QVVEAWLADP RFDTMLDRDF YLADVRRRAH
PATFAHISRL HAVSAVALAR HRPHQVRTRI DYALANRNAG GMSGTQVTQY LRRLTGGSVA
VSVFDDDHNS IVREPSARRV AAFLDGSPDA TRVGFEPLAQ ETPA