Gene Bamb_6123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6123 
Symbol 
ID4315027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp683207 
End bp684193 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content66% 
IMG OID638153967 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_778001 
Protein GI115360864 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.72683 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0275996 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCACC GATTCCCCCG CTCCCGTACC GCACTGGCCG TCGCGCTGAT GGCCGGCTTC 
GCGATGTCCG CGCAGGCCCG CGTATTCCGC TCGGCGGACG TGCACGGCGA CAGCTTCCCG
ACCAACATGG CGGTCAAGTT CATGGGCGAC GAGCTGTCGA AGCTGACGGG CGGCAAGGAC
TCGATCAAGG TGTTCGGCAA CAGCGCGCTC GGCTCCGAGA AGGACACGGT CGACCAGGTG
CGGATCGGCG CGATCGACAT GGCGCGCGTG AACGGCGCGT CGTTCAACGA GATCGTGCCG
GAGTCGCTGA TCCCGTCGTT CCCGTTCCTG TTCCGCGACG TCGACCATTT CCGCAAGGCG
ATGTACGGTC CGGCCGGCCA GAAGATCCTC GACGCATTCG CGGCGAAGGG GATGATCGCG
CTGACGTTCT ACGAGAGCGG CGCGCGCTCG ATCTATGCGA AGCGTCCGGT GCGCACGCCG
GCGGACATGA AGGGGCTGAA GGTGCGCGTG CAACCATCGG ACCTGATGGT CGACGAGATC
CGGGCGATGG GCGGCACGCC GACGCCGATG CCGTTCGCCG AGGTGTACAC GGGCCTGAAG
ACGGGCCTCG TCGACGCGGC GGAAAACAAC CTGCCGTCGT ACGAGGAAAC CAAGCACTTC
GAGGTGGCGC CCGACTACTC GGAGACGCAG CATGCGATGA CGCCGGAAGT GCTGGTGTTC
TCGAAGAAGA TCTGGGACAC GCTGTCGCCG CAGGAGCAGG CCGCGATCCG GAAGGCCGCG
GCCGACTCGG TGCCGTACTA CCAGAAGCTG TGGACCGCGC GTGAGGCATC GGCGCAGCAG
GCGGTGACGA AGGGCGGCGC GAATATCCTG CCGGCCGCGC AGGTCGACCG CGCGGCCTTC
GTGAAGGCGA TGCAGCCGCT GTGGACGAAG TACGAGAAGA CGCCGCAGAT GAAGCAGATC
GTCGACGAGA TCGAGGCAAC CAAGTGA
 
Protein sequence
MTHRFPRSRT ALAVALMAGF AMSAQARVFR SADVHGDSFP TNMAVKFMGD ELSKLTGGKD 
SIKVFGNSAL GSEKDTVDQV RIGAIDMARV NGASFNEIVP ESLIPSFPFL FRDVDHFRKA
MYGPAGQKIL DAFAAKGMIA LTFYESGARS IYAKRPVRTP ADMKGLKVRV QPSDLMVDEI
RAMGGTPTPM PFAEVYTGLK TGLVDAAENN LPSYEETKHF EVAPDYSETQ HAMTPEVLVF
SKKIWDTLSP QEQAAIRKAA ADSVPYYQKL WTAREASAQQ AVTKGGANIL PAAQVDRAAF
VKAMQPLWTK YEKTPQMKQI VDEIEATK