| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6104 |
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| Symbol | |
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| ID | 4315008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 662542 |
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| End bp | 664590 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638153948 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_777982 |
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| Protein GI | 115360845 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.640777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.788384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCC GCATGAACAA ATCCGGCCCC TCCCCTTGGT CCGCGCTCGA CGCCGCGATC
GCCCGCGGAC GCGACGCGCT GATGCGCCTT CAGCAGCCTG ACGGCAGCTG GTGTTTCGAA
CTCGAATCCG ACGCGACGAT CACCGCGGAA TACATCCTGA TGATGCATTT CATGGACAAG
ATCGACGACG CGCGCCAGGA GAAGATGGCG CGCTACCTGC GCGCGATCCA GCGGCTCGAC
ACGCACGGCG GGTGGGACCT GTATGTCGAC GGCGACCCGG ACGTGTCGTG CAGCGTGAAG
GCGTACTTCG CGCTGAAGGC CGCCGGCGAC AGCGAGCATG CGCCGCACAT GGTTCGCGCG
CGCGACGCGA TCCTCGAGCT CGGCGGCGCG GCACGCTCGA ACGTGTTCAC GCGCATCCTG
CTCGCGACGT TCGGCCAGGT GCCGTGGCGC GCGACGCCGT TCATGCCGAT CGAATTCGTG
CTGTTTCCGA AGTGGGTGCC GATCTCGATG TACAAGGTCG CGTACTGGGC CCGCACGACG
ATGGTGCCGC TGCTCGTGCT GTGCTCGCTG AAAGCGCGTG CGCGCAACCC GCGCAACATC
GCGATTCCCG AGCTGTTCGT CACGCCGCCC GACCAGGAAC GCCAGTACTT CCCGCCCGCG
CGCGGGATGC GCCGCGCATT CCTCGCGCTC GACCGCGTGG TGCGCCATGT CGAGCCGCTG
CTGCCGAAAC GCCTGCGGCA GCGCGCGATC CGGCATGCGC AAGCATGGTG CGCGGAGCGC
ATGAACGGCG AGGACGGCCT CGGCGGGATC TTTCCGCCGA TCGTGTACAG CTATCAGATG
ATGGACGTGC TCGGCTACCC GGACGATCAT CCGCTGCGCC GCGACTGCGA GAACGCGCTG
GAGAAGCTGC TGGTCACGCG GCCCGACGGC AGCATGTACT GCCAGCCGTG CCTGTCGCCG
GTGTGGGACA CCGCGTGGAG CACGATGGCG CTCGAGCAGG CGCGCGGCGT GGCCGTGCCG
GAAGCCGGCG CGCCCGCGAG CGCACTGGAC GAACTCGACG CACGCATCGC CCGCGCGTAC
GACTGGCTGG CCGAGCGCCA GGTGAACGAC CTGCGCGGCG ACTGGATCGA GAACGCGCCC
GCCGACACGC AACCGGGCGG CTGGGCGTTC CAGTACGCGA ACCCGTACTA CCCCGACATC
GACGACAGCG CGGTCGTCAC CGCGATGCTC GACCGCCGCG GCCGCACGCA TCGCAACGCG
GACGGCTCGC ATCCGTATGC GGCGCGCGTC GCGCGCGCGC TCGACTGGAT GCGCGGGCTG
CAATCGCGCA ACGGCGGCTT CGCGGCCTTC GACGCCGACT GCGACCGCCT GTACCTGAAC
GCGATTCCGT TCGCCGATCA CGGCGCGCTG CTCGATCCGC CGACCGAGGA CGTGTCGGGC
CGCGTGCTGC TGTGCTTCGG CGTCACGAAG CGCGCGGACG ACCGCGCGTC GCTCGCGCGC
GCGATCGACT ACGTGAAGCG CACGCAGCAG CCCGACGGCA GCTGGTGGGG CCGCTGGGGC
ACGAACTACC TGTACGGCAC GTGGAGCGTG CTGGCCGGGC TCGCGCTCGC GGGCGAGGAC
CCGTCGCAGC CGTACATCGC CCGCGCGCTC GCGTGGCTGC GCGCCCGTCA GCACGCGGAC
GGCGGCTGGG GCGAGACGAA CGACAGCTAC ATCGACCCGG CGCTCGCCGG CACCAATGCG
GGCGAAAGCA CGTCGAACTG CACCGCGTGG GCGCTGCTCG CGCAGATGGC GTTCGGCGAC
GGCGAATCGG AATCGGTCAG GCGCGGCATC GCGTATCTGC AATCCGTGCA GCAGGACGAC
GGCTTCTGGT GGCACCGGTC GCACAACGCG CCGGGCTTTC CGCGCATCTT CTACCTGAAG
TATCACGGCT ACACGGCGTA CTTCCCGCTG TGGGCGCTCG CGCGCTATCG GCGGTTGGCT
GGCGGCGTGT CGGCAGCGGG CGCGCACGCG GTGCCGGCGT CCACGGGCGC GGACGCCGCG
CTCGCCTGA
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| Protein sequence | MIRRMNKSGP SPWSALDAAI ARGRDALMRL QQPDGSWCFE LESDATITAE YILMMHFMDK
IDDARQEKMA RYLRAIQRLD THGGWDLYVD GDPDVSCSVK AYFALKAAGD SEHAPHMVRA
RDAILELGGA ARSNVFTRIL LATFGQVPWR ATPFMPIEFV LFPKWVPISM YKVAYWARTT
MVPLLVLCSL KARARNPRNI AIPELFVTPP DQERQYFPPA RGMRRAFLAL DRVVRHVEPL
LPKRLRQRAI RHAQAWCAER MNGEDGLGGI FPPIVYSYQM MDVLGYPDDH PLRRDCENAL
EKLLVTRPDG SMYCQPCLSP VWDTAWSTMA LEQARGVAVP EAGAPASALD ELDARIARAY
DWLAERQVND LRGDWIENAP ADTQPGGWAF QYANPYYPDI DDSAVVTAML DRRGRTHRNA
DGSHPYAARV ARALDWMRGL QSRNGGFAAF DADCDRLYLN AIPFADHGAL LDPPTEDVSG
RVLLCFGVTK RADDRASLAR AIDYVKRTQQ PDGSWWGRWG TNYLYGTWSV LAGLALAGED
PSQPYIARAL AWLRARQHAD GGWGETNDSY IDPALAGTNA GESTSNCTAW ALLAQMAFGD
GESESVRRGI AYLQSVQQDD GFWWHRSHNA PGFPRIFYLK YHGYTAYFPL WALARYRRLA
GGVSAAGAHA VPASTGADAA LA
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