| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6079 |
|---|
| Symbol | |
|---|
| ID | 4314983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 639274 |
|---|
| End bp | 640158 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153923 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_777957 |
|---|
| Protein GI | 115360820 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.929985 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCA ACGACCTCAG GATCTTCGTG TCGACCGTCG ATGCGGGCAG CTTCACGGCG
GCGGCCGATC AACTGATGCT GTCCAAGCAA TTCGTGAGCC GGCGCACGAT GGCGTTGGAG
GCGTCGCTCG GCGTGCGCCT CCTGCATCGC AATACGCGCA ATCTCGCGGT CACGGAATCG
GGGCAGGAGT TCTATGCGCG CGCGCAGCGG ATCCTCGCCG AGGTCGCCGA CGCCGAGCAG
GCGATGTCGG TGCGCAGCAC CGAACTGCAT GGCTCGCTGA AGATCAGCGC GCCGCTGTCG
TTCGGGATCA CGCACGTGTC GCCGCTGATC GCCGAATTCC TGGCCGCGCA TCCGGCCGTG
CGGCTGAACC TCGACCTGAC CGACCGGCGC GTCGATCTCA TCGGCGAGGG CTTCGACCTC
GTGCTGCGGA TCGGCGCGCT CGAGGATTCG ACGCTGATCG CGCGTCCGCT CGGTGCGTGG
AAGATGATCG CGTGCGCGAG CCCCGCTTAC CTGAAGCGGC AGGGCACGCC CGACACGCCA
GCCGATCTCG CCGCGCACAC GTGCCTGCTG TACGGCCGCG AGCGGCGCGT CGGCTGGGAA
TTCCGGATCG ACGGCGCGGC GCGCACGTTC GACGTGCAGG GGCCGCTCGT CGCGAACAAC
GGTGAAGTCG TGCGCGACGC GGCGATCGCG GGGCTCGGCA TCGCGCTGCT GCCGCATTTC
ATCGTCGGCG CGGCGCTCGA CAGCGGCGCG CTCGTGCCGG TGCTCGACGC GTACGCGCCG
TCGCCGATCA CGCTGAACGC GGTGTTTCCG CAGCATCGGG AAGGGTTCGT CACGCTGCGC
ACCTTCATCG GATTTCTGGC GGAGCGGCTG GGTATGCGGA GGTAG
|
|---|
| Protein sequence | MELNDLRIFV STVDAGSFTA AADQLMLSKQ FVSRRTMALE ASLGVRLLHR NTRNLAVTES
GQEFYARAQR ILAEVADAEQ AMSVRSTELH GSLKISAPLS FGITHVSPLI AEFLAAHPAV
RLNLDLTDRR VDLIGEGFDL VLRIGALEDS TLIARPLGAW KMIACASPAY LKRQGTPDTP
ADLAAHTCLL YGRERRVGWE FRIDGAARTF DVQGPLVANN GEVVRDAAIA GLGIALLPHF
IVGAALDSGA LVPVLDAYAP SPITLNAVFP QHREGFVTLR TFIGFLAERL GMRR
|
|---|
| |