Gene Bamb_5944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5944 
Symbol 
ID4314849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp477601 
End bp479838 
Gene Length2238 bp 
Protein Length745 aa 
Translation table11 
GC content64% 
IMG OID638153784 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_777823 
Protein GI115360686 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.120992 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGCGG GCGATACACG CGTTGGCGAA CTGAAGGCTC GGCAGACTGG CGATGACGAA 
TCGATGATTT TTCCTACCGA TACCGCGAGC CACTGTCCGG CCGAGGCGGA ATTTTTCCTG
CACCTGAAGC CGATCGAATC GATCCGCGTT CAGCCGCCTG TTGTGGTGCC CGAGCAGACC
GCGCTGCACG AAGTCATCGC ACGGATGCGT GTGCAACGGC TCGATGCGAT CCTCGTCGGC
TACGACGATG GCGAGCACGG CATCCTGACC GAGCGGGACA TCGTCCGGCT ATTGGCAGAC
GGAGGGGCCC ACGGCGCGGT CGGGGCCTAC GCGAGCAAGC CGCTGCAGAT GCTGACCGCA
AGACAGAGCC TGTATGCGGC GCAGCGTTTC ATGACCGAGC AAAGTGTGCG GCATGTTGGC
ATCGAGGACG AGGATGGCCG GCTGACCGGG TTGCTCTGTT TCGCGGACGT GCTGCAGAGC
ATCGAGCACG AATACGCGAA CCAGCTGCGC AGCGCGTTGC GCGAGCGCGA CGAAGCGCTG
GGTCTCGCGC GCTTTAACCT GCGCATGGCG GATCGGGTGT TCGAATCGGC GCTCGAAGGC
ATCATGGTGA CCGACCGGCA CGCGAAGATC GAGCGTGTCA ACCAGGCCTT CACGCGCCTG
ACCGGGTACA CCGAGGACGA AGTGGTCGGG CGCAACCCGG GCCTGCTGAG TTCCGGGCGC
CAGACGCCCG ATTTCTACAA GCAGCTGTGG CATTCGCTCA CAACCGATGG CCACTGGCAA
GGCGAAATCT GGAATCGCCG CAAGGCCGGC GAGCTGTTTC TCGAATACCT GACGATCACC
AGCATTCGCG ACAGCGAAAG CGAGATCTCC CACTACGCGG CGATTTTTTC CGACATCACG
CAGCGGCGCC AGGCGGAGGA GCGGCTGGGC TATCTCGCCA CGCACGACGT GCTCACCAAT
CTCGCGAACC GGATGCTGTT CGAGGAGCGG CTCACGCACG CGATCGTTCA TGCGAAGCGG
TTCGGGCGCA AGGTCGCGGT GATGTACCTC GATCTCGACC GCTTCAAGCT GGTCAACGAT
ACGCTCGGCC ACAACGCAGG CGACGAGGTG CTGAAGATGG TCGCGGAGCG CATCGTCGCG
AATGTGCGCG CGAACGACAC GGTGGCGCGC ATGGGCGGTG ACGAATTCGC GCTCGTGCTC
GAGGAGGTCG ACGATGTCCG CGACGTCGGG CGAGTCGCGC GCAAGCTGCT GGACGAAGTG
GGACGGGCGA TCGATATCGG CGATCGCCAG ATCTTCGTGA CGCCGAGCAT CGGCATCAGC
ATCTATCCGG ACGACGGCAC CGAGGCGGAG GACTTGATCC TGCTCGCGGA CCAGGCGATG
TACGGTGCGA AGAGCCGCGG CAGGAACGTG TTCCAGTTCT TCGAGAGCAA GATGACGTCG
TCGGCGATCG AGCAGCTGGA GACGCTCGGC GAGTTGCACC GCGCGCTCGA GCAGAATGAA
TTCCGCCTGT TCTACCAGCC GCAATACGAT CTGGCCAGCG GCCGGATCGT CGGCGTGGAG
GCGCTGCTGC GCTGGTTGCA TCCGAGCAGG GGTTTGGTGC CGCCGCGCGA CTTCATCGGG
CTCGCGGAGC GATCGGCGCT GACCGTCCCG ATCGGCAGGT GGGTGCTGCA CGAAGCCTGC
CGCCAGGCGC GCCGCTGGCT CGACGAGGGC TTCGAGTTCG GGCGTGTGTC GGTGAACGTG
TCGGCGCGGC AGTGCTTTAC CGACCACTTT CTGAGCGACC TGACGACCAT TCTCAGTGAA
ACCGCGTTGC CGGCCGAATA CCTGCAGCTC GAGTTGCTCG AAAGCATGGC GATGAACACC
CGCGAGGAAA TCGGCATCCT GCTGCGCGAA CTGGCGACGC GGGGGATCAG CCTCGCGATC
GACGATTTCG GTACGGGTTA TTCATCGCTG GTGTATCTGA AGGATCTGCC CGTCGATACG
CTGAAGATCG ATCAGTCGTT CCTCACGGAC TGCGGCTCGG GCAGTACGGA CGACGCGATC
GTGCGCGCGA TCGTTGCAAT GGGGCGCGCG CTGGGGCTCG ATGTCGTGAT GGAGGGCGTC
GAGACGGCAA AGCAGCTGGC CTTCCTGCAG GAGATCGGTT GCCACCAGGG CCAGGGCTTC
CTGTTCGCAC GGCCGCAGCC TGCCGACCAG CTGGTCGGCA TCTCGTCGCG CCGCGGCGCT
GAATTGCTGG CAGAGTGA
 
Protein sequence
MRAGDTRVGE LKARQTGDDE SMIFPTDTAS HCPAEAEFFL HLKPIESIRV QPPVVVPEQT 
ALHEVIARMR VQRLDAILVG YDDGEHGILT ERDIVRLLAD GGAHGAVGAY ASKPLQMLTA
RQSLYAAQRF MTEQSVRHVG IEDEDGRLTG LLCFADVLQS IEHEYANQLR SALRERDEAL
GLARFNLRMA DRVFESALEG IMVTDRHAKI ERVNQAFTRL TGYTEDEVVG RNPGLLSSGR
QTPDFYKQLW HSLTTDGHWQ GEIWNRRKAG ELFLEYLTIT SIRDSESEIS HYAAIFSDIT
QRRQAEERLG YLATHDVLTN LANRMLFEER LTHAIVHAKR FGRKVAVMYL DLDRFKLVND
TLGHNAGDEV LKMVAERIVA NVRANDTVAR MGGDEFALVL EEVDDVRDVG RVARKLLDEV
GRAIDIGDRQ IFVTPSIGIS IYPDDGTEAE DLILLADQAM YGAKSRGRNV FQFFESKMTS
SAIEQLETLG ELHRALEQNE FRLFYQPQYD LASGRIVGVE ALLRWLHPSR GLVPPRDFIG
LAERSALTVP IGRWVLHEAC RQARRWLDEG FEFGRVSVNV SARQCFTDHF LSDLTTILSE
TALPAEYLQL ELLESMAMNT REEIGILLRE LATRGISLAI DDFGTGYSSL VYLKDLPVDT
LKIDQSFLTD CGSGSTDDAI VRAIVAMGRA LGLDVVMEGV ETAKQLAFLQ EIGCHQGQGF
LFARPQPADQ LVGISSRRGA ELLAE