| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5944 |
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| Symbol | |
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| ID | 4314849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 477601 |
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| End bp | 479838 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638153784 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_777823 |
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| Protein GI | 115360686 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.120992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCGG GCGATACACG CGTTGGCGAA CTGAAGGCTC GGCAGACTGG CGATGACGAA
TCGATGATTT TTCCTACCGA TACCGCGAGC CACTGTCCGG CCGAGGCGGA ATTTTTCCTG
CACCTGAAGC CGATCGAATC GATCCGCGTT CAGCCGCCTG TTGTGGTGCC CGAGCAGACC
GCGCTGCACG AAGTCATCGC ACGGATGCGT GTGCAACGGC TCGATGCGAT CCTCGTCGGC
TACGACGATG GCGAGCACGG CATCCTGACC GAGCGGGACA TCGTCCGGCT ATTGGCAGAC
GGAGGGGCCC ACGGCGCGGT CGGGGCCTAC GCGAGCAAGC CGCTGCAGAT GCTGACCGCA
AGACAGAGCC TGTATGCGGC GCAGCGTTTC ATGACCGAGC AAAGTGTGCG GCATGTTGGC
ATCGAGGACG AGGATGGCCG GCTGACCGGG TTGCTCTGTT TCGCGGACGT GCTGCAGAGC
ATCGAGCACG AATACGCGAA CCAGCTGCGC AGCGCGTTGC GCGAGCGCGA CGAAGCGCTG
GGTCTCGCGC GCTTTAACCT GCGCATGGCG GATCGGGTGT TCGAATCGGC GCTCGAAGGC
ATCATGGTGA CCGACCGGCA CGCGAAGATC GAGCGTGTCA ACCAGGCCTT CACGCGCCTG
ACCGGGTACA CCGAGGACGA AGTGGTCGGG CGCAACCCGG GCCTGCTGAG TTCCGGGCGC
CAGACGCCCG ATTTCTACAA GCAGCTGTGG CATTCGCTCA CAACCGATGG CCACTGGCAA
GGCGAAATCT GGAATCGCCG CAAGGCCGGC GAGCTGTTTC TCGAATACCT GACGATCACC
AGCATTCGCG ACAGCGAAAG CGAGATCTCC CACTACGCGG CGATTTTTTC CGACATCACG
CAGCGGCGCC AGGCGGAGGA GCGGCTGGGC TATCTCGCCA CGCACGACGT GCTCACCAAT
CTCGCGAACC GGATGCTGTT CGAGGAGCGG CTCACGCACG CGATCGTTCA TGCGAAGCGG
TTCGGGCGCA AGGTCGCGGT GATGTACCTC GATCTCGACC GCTTCAAGCT GGTCAACGAT
ACGCTCGGCC ACAACGCAGG CGACGAGGTG CTGAAGATGG TCGCGGAGCG CATCGTCGCG
AATGTGCGCG CGAACGACAC GGTGGCGCGC ATGGGCGGTG ACGAATTCGC GCTCGTGCTC
GAGGAGGTCG ACGATGTCCG CGACGTCGGG CGAGTCGCGC GCAAGCTGCT GGACGAAGTG
GGACGGGCGA TCGATATCGG CGATCGCCAG ATCTTCGTGA CGCCGAGCAT CGGCATCAGC
ATCTATCCGG ACGACGGCAC CGAGGCGGAG GACTTGATCC TGCTCGCGGA CCAGGCGATG
TACGGTGCGA AGAGCCGCGG CAGGAACGTG TTCCAGTTCT TCGAGAGCAA GATGACGTCG
TCGGCGATCG AGCAGCTGGA GACGCTCGGC GAGTTGCACC GCGCGCTCGA GCAGAATGAA
TTCCGCCTGT TCTACCAGCC GCAATACGAT CTGGCCAGCG GCCGGATCGT CGGCGTGGAG
GCGCTGCTGC GCTGGTTGCA TCCGAGCAGG GGTTTGGTGC CGCCGCGCGA CTTCATCGGG
CTCGCGGAGC GATCGGCGCT GACCGTCCCG ATCGGCAGGT GGGTGCTGCA CGAAGCCTGC
CGCCAGGCGC GCCGCTGGCT CGACGAGGGC TTCGAGTTCG GGCGTGTGTC GGTGAACGTG
TCGGCGCGGC AGTGCTTTAC CGACCACTTT CTGAGCGACC TGACGACCAT TCTCAGTGAA
ACCGCGTTGC CGGCCGAATA CCTGCAGCTC GAGTTGCTCG AAAGCATGGC GATGAACACC
CGCGAGGAAA TCGGCATCCT GCTGCGCGAA CTGGCGACGC GGGGGATCAG CCTCGCGATC
GACGATTTCG GTACGGGTTA TTCATCGCTG GTGTATCTGA AGGATCTGCC CGTCGATACG
CTGAAGATCG ATCAGTCGTT CCTCACGGAC TGCGGCTCGG GCAGTACGGA CGACGCGATC
GTGCGCGCGA TCGTTGCAAT GGGGCGCGCG CTGGGGCTCG ATGTCGTGAT GGAGGGCGTC
GAGACGGCAA AGCAGCTGGC CTTCCTGCAG GAGATCGGTT GCCACCAGGG CCAGGGCTTC
CTGTTCGCAC GGCCGCAGCC TGCCGACCAG CTGGTCGGCA TCTCGTCGCG CCGCGGCGCT
GAATTGCTGG CAGAGTGA
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| Protein sequence | MRAGDTRVGE LKARQTGDDE SMIFPTDTAS HCPAEAEFFL HLKPIESIRV QPPVVVPEQT
ALHEVIARMR VQRLDAILVG YDDGEHGILT ERDIVRLLAD GGAHGAVGAY ASKPLQMLTA
RQSLYAAQRF MTEQSVRHVG IEDEDGRLTG LLCFADVLQS IEHEYANQLR SALRERDEAL
GLARFNLRMA DRVFESALEG IMVTDRHAKI ERVNQAFTRL TGYTEDEVVG RNPGLLSSGR
QTPDFYKQLW HSLTTDGHWQ GEIWNRRKAG ELFLEYLTIT SIRDSESEIS HYAAIFSDIT
QRRQAEERLG YLATHDVLTN LANRMLFEER LTHAIVHAKR FGRKVAVMYL DLDRFKLVND
TLGHNAGDEV LKMVAERIVA NVRANDTVAR MGGDEFALVL EEVDDVRDVG RVARKLLDEV
GRAIDIGDRQ IFVTPSIGIS IYPDDGTEAE DLILLADQAM YGAKSRGRNV FQFFESKMTS
SAIEQLETLG ELHRALEQNE FRLFYQPQYD LASGRIVGVE ALLRWLHPSR GLVPPRDFIG
LAERSALTVP IGRWVLHEAC RQARRWLDEG FEFGRVSVNV SARQCFTDHF LSDLTTILSE
TALPAEYLQL ELLESMAMNT REEIGILLRE LATRGISLAI DDFGTGYSSL VYLKDLPVDT
LKIDQSFLTD CGSGSTDDAI VRAIVAMGRA LGLDVVMEGV ETAKQLAFLQ EIGCHQGQGF
LFARPQPADQ LVGISSRRGA ELLAE
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