Gene Bamb_5938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5938 
Symbol 
ID4314843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp469745 
End bp470119 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content67% 
IMG OID638153778 
Producttransport-associated 
Protein accessionYP_777817 
Protein GI115360680 
COG category[R] General function prediction only 
COG ID[COG2823] Predicted periplasmic or secreted lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.483865 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.018454 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAT CCACTCGCAT CCCATGCATC GCCGTCGTGG TGATGCTCGC CGCGCTCAGC 
GACTGCGCGA GCGCCCAACC GGTTGCCGCA GAAGCGGCGC CCTCGTCCGC GACCGGTACG
AAGGCAGCCG CAAGCGACGT CAAAGCCGCC AGGGCCGCGA ACCGCAAGCT CGCGCACCGC
GTGGAAAACG CACTGGCGCG CACGCGCGGC CTGAACTCCG CGCGCATCAT CGTGACGGTA
CGCGGCGGAC ACGTCACGCT CTCCGGCGCC GTGAACTACA ACAAGCAGAT CACATTCGCG
GTCGAGGCCG CGCGCAAGGT CGAAGGCGTC ATCGACGTCG ATAACCGCAT TCGCGTATCG
GGCGCATCGC TCTGA
 
Protein sequence
MKISTRIPCI AVVVMLAALS DCASAQPVAA EAAPSSATGT KAAASDVKAA RAANRKLAHR 
VENALARTRG LNSARIIVTV RGGHVTLSGA VNYNKQITFA VEAARKVEGV IDVDNRIRVS
GASL