Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5919 |
Symbol | |
ID | 4314824 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 402538 |
End bp | 409929 |
Gene Length | 7392 bp |
Protein Length | 2463 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 638153759 |
Product | beta-ketoacyl synthase |
Protein accession | YP_777798 |
Protein GI | 115360661 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [COG3321] Polyketide synthase modules and related proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00253672 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGCAAGACA TTCAGCAGCT CCTCGCGAAG AGCCTGACCG AAATCAAGCG CCTGAAGGCG GCCAACCAGG CGCTCGAGCA GGCCCGCCGC GAGCCGATCG CGATTGTCGG CGCGGCCTGC CGCTACCCGG GCGGGATCGG CTCGCTCGAC CAGCTCTGGA CCGCGCTCGA GGCGGGCCGC GACGGCATCC GCACGATGGT CGGCGAGCGC TGGCCGATGC AGCGCTTCCT CACCGACGAT CCCCACCGGC CCGGCGGCAT CTACAGCGAT GCGATGGGCC TGCTCGAGGC GATCGACGGT TTCGATGCCG CGCATTTCGG CCTGCGCCAC GACGAGGCGA TCCACATCGA CCCGCAGCAT CGGCTGCTGA TGGAAGTGGC CTGGGAGGCC TTCGAGGATG CCGGCTACGC GGTGGACGCG TTCTCGGGCA GCCGCACCGG CGTCTACGTC GGGATCATGA ACGACGACTA CGGCCAGCTG CAGGGGCCGC TGGAGGCGGC CAGCCTCTAC ATCGGCTCGG GCATCGCCAA GAGCTGCGCG GCGGGGCGGC TGGCCTACAC CTTCGGGCTG GAGGGGCCGA CGCTGGCGCT CGACACCGCC TGCTCCTCGT CGCTGGTGGG CGTGCACCTG GCCGTGCAGG CGCTGCGGCG CGGCGAATGC GACGCGGCGC TGGCCGGTGG CGTGAACCTG ATCCTTTCGC CGCAGGGCAC GGTGGTGGCC TGCCGCTCGC AGATGCTCTC GCCGAGCGGG CGCTGCCGCA CCTTCGACGC CAGCGCAGAC GGCTACGTGC GCGCCGAGGG CTGCGGGCTG GTGCTGCTCA AGCGCTTGTC CGATGCCGAA CGCGACGGCG ACCGGATCCT CGCGCTGGTC CGCGGCTCGG CCGTCAACCA CGACGGCCGC ACGCAGGGCC TGACCGCGCC GAGCGGCCAG GCGCAGCGGC GCGTGATCGC GGCGGCGCTG GCCGACGCGG GCGTGGCGGC CGCCGAGGTC GGCTTCGTCG AATGCCACGG CACCGGCACC GCGCTGGGCG ATCCGATCGA GCTGCGCGCG CTGGAGGCCA GCTACGTGCT CGAAGCGGGC GAGCGCGCGC CGCTGGTGGT CGGCGCGCTG AAGTCCAATC TCGGCCACAT GGAATCGGCG GCCGGTATCG GTGGCCTGCA CAAGGCCATC CAGGTGGTGC GCCATCGCAG GGTGCCGAGG AACCTGCATT TCGAGACCCT CAATCCGCAG ATTCGCGTCG ACCTCGAGCG GCTGCGCATC GCCGCCGAGG CGGTGGCGAT GCCGGAACGG GAACGCGCGC TGGCGGGCGT CAGCTCGTTC GGCTTCAGCG GCACCAATGC GCACGTGATC GTCGAGGCCT ATGCGCCGCG GGACGATCGA GTGGGCGTGG ACGGCTCGGC ACATGAAGAC GCCGCCAACG CGGAGGCTGC ACCGCTGCAG CTATTCCGGC TTGCCGCGCA TTCGGGCGCC GCGCTGGCCG ACTACGCGCG CCGCTACCTC GACTGGCTCG ACGACGCGCA CGCGCGGCAA GCCCGGCTCG ATCCGGCCGC GCTCTGCTAC ACGGCCGCGG TGGGCCGCGG CGAGGCCGGC TGCCGGATCG CGCTGAGCTT CGAGACGCTC GATGACCTGC GCGCCTGCCT GCGCGAATAC CTCGACGTGG CCGGCGGCGA CCCGAGCGAG CCGGTGCCGA AATCCTGCGC GGCCGAGTGG GTGATCGGCG GCGCGGCCGA TGTCGACTGG CGCGTGGCCG GGGCGCTGCA TGCGCAGCCC GGCTTCTATC GCGAGCGGGT CCAGCAGGCC TGGGCGCGCC TCGCGTCGCG CGTGCCGGAT GGCGCCGCCG CGTTCGCGCG GCTCTGCGCG GGCGGCGATG CCGGCTTGCC GGCCGACGCG ACGCTACCGC ACACGGTGCA CCGCTGGGCG CTCGCGCAGC TGCTAGTCCA CCTCGGCCTG CAGCCGGCCC GCGTGAGCGG CCATGGCGCC GGCGAGTATG TGGCGGCGGC CGTCGCGGGC CTGGTCGACT GGGACACGGC GCTCGGCCTC GCGGCCGGCG AGGCACTGCC GGCCGGCTTC AAGGCGGGCC GCGCGCGCTG CGAATTCACC AGCCGCTTCG GCACGGGCGA GCTGCCCGAG TCGTGGCAGC GCGACGGCGG CCCGGCGGCG GCCGACGCGG CTCCGCTCGG CGACGAGGCT TGGCCCGAGC ACGCGCAGGG CATCGTGGTC GAGCTGGGCG CGGGCCTCGC GCTGCGGCTC GGCGATGCGG CCGACGAGCG CCTGTTCCGC TGGACCCACG GCCGCACCAA TCGCGACCCG GCCCGGCCGC TCGAGGCCTT CCTCGCGCAG GCCTACATGG CGGGCCTGCC GGTGCGCTGG GCGCCGCTGT TCGAGGCGCA GGCGCCGCGC CGCCAGAGCC AGCCCGGTTA TCCGTTCCAG CGCGAGCGCG TGTGGACCGA CTGGGGGTAT TCGTTCGACG CGACGCTGCC GTCCACCGTC GGCCGCGCCG GCGGCGGCGT GGCGCCGCGC CTGCCGGCGC TCGCCACCGG GCTGGCCGCG GAGCCGCTCG ATCACCCGGT GCTGCGCAGC CTGTTCGCGT GCCCGTCGGG CGCACGCAAT TTCTCGGGCG AGCTTTCGCT CACGGCGCTG CCCTACCTGG CCGCGCACCG CATCCTCGGC GAGATCGTAC TGCCGGCCAG CGCGCAGTTC GACCTGATCG CCACCGCGGG CCGCGCATGC TGGCCGGGCC AGCCGCTGCT GATCGACGAG CTGCAGCTGC CGAACCGCTG CGTGCTCGGC GACGAGCCGC TCGAAGTCTA CTGCCACCTG CGGCCCGCCG ACGGGCGCGT CGAGCTGCAT GGGCGGCCGC GCGGCGCGCC GGGCTGGACG CTCCACGCGC GGGCGCGCAT CGCGCCGGAC GAGGCCCACG CGGCCAACGC GCCGGCCACC GTCGATCCGG CCGCCTGGCG CGCCGCCTGC GCCGAACCGG TGCCGGTGCG CCGCCACTAT CACGCGATCG CGCAGGTCGG GCTCGAATAC GAGGCCGACT TCCAGGGCAT CTTCGAACTG TCGCGCGGCA CCGGCTGCGC GCTCGCCAAG ATCGCGCTGC CGCCCGGCGT CGACCAGTCG CTGGACGGCT ACAGCACCCA CCCGATCCTG CTCGACGCCT GCCTGCAGGC GATTTCCGCA GCCTCGCCGC CCGATGCCGG CGGCGAGCTG CTGATCCCGG CCGCGATGCG CGGCATCCAC CTGTTCAGGC CGCTGCCCGA ACTGATCTGG TGCCGCGTCG AGGTCCTCGC CGACGACGGC GGGCGCGGCA CCCAGCACGC CAAGCTGACG ATCGTCGACA TGCAGGGCGA GCCGGTGATG CGCATCGACC GCTTCGAGAC CACGCGTTAC ACGGGCGCCG TCGCGCCCGC TGCCGAGAAC TGGACCCACT GGCTCTACGA CCGGCACTGG GTGCCGGCCG CGCCGTGCGC GGCTTCGTCG TCGTCGGCCG AGCGTGCCGC GCGCCACTGG CTGCTGCTCA GCGACGGCGG CACGGCCTGC GCGGCGCTCG CGACGGTGCT GGCCGCGCGC GGCGATCGCG TCTCGGTGCT CGGCCGCGAG GCCGCGCCGG CCGACGCGGA CGGCTTCGGC GCGTTGATCG ATGGCGCGGC GGCCGATGGC GGCCTCGACG GCGTGATCCA CGGCTGGTCG CTCGACGGCT TCGATCCCGA GGCGCACGGG CCGGGGCACG AGGCCGTGTC GGACGAGGCG CTGGCGCGCT GCGCGCAGGG GCCGCTGTGG CTATGCCAGG CCGCGCTCGC GCCGGGCCGG CGCGAACTGG CGCTGCATTT CCTCACGCGC GGCAGCCAGC CGGCCGGCGG CTCGCGCGTG CGGGCGCCGC TGGCCGCGCT GGCCTGGGGG CTGGTGGGCA GCTTCGTCAA CGAACAGCGC CGCCCGGCGC GCCTGGTCGA TCTCGACCCC GACAGCCGCG ACGGCCGCGC GGATGCCGCG CTGCTGGTGC AGGCGCTTCA CGCGGACGGC GAGGAGACGC AGTACGCGGT GCGCGGGGCG CGCCTGCTGG TGGCGCGGCT GCGGCGCGCC GCGCCGCTCG CGGCGCCAGC GCCGGTGATC GATCCCGAGG CCAGCTACCT GATCACCGGC GGTTACGGCC AGCTCGGCAT CGAGACGGCC ACCGCGCTGG CGCGGCAGGG CGCGCGCCAC CTGGTGCTGG TGGGCCGCGA TCCGTCCCGC GCCGAGGGCG ACCCGGCGCT GGCCGGCCTG CGCGAGATGG GCGTGCGACT GACGCCGCTG GCGGCCGACG TGGGCGAGCG CGCCAGCTTC CTGCCGCGCC TGGCCGAATG CCTGCGCACG CTGCCGCCGC TCAAGGGCGT GGTCCATTCG GCGGGCAGCC TGGACGACGG CGTGCTCGAC GACCAGGACT GGGGGCGCTA CCTCGCGGTG TTCGCCGCCA AGGTGGCCGG CACGCTCAAT CTCCATCACG CGCTGCGCAA GCATGCGCTC GATTTCTTCG TGCTCTATTC GTCGGCGGCC GCGCTGCTCG GCAACCCGGG GCAGACCAAC TACGCGGCCG CCAATGCCTT CCTCGACAGC TTCGCCGCCT ATCGCCGCGG CCTCGGGCTG GCAGGGCTGG CGATCGGCTG GGCCGGCTGG GCGGGCGGGG GGATGGCCGC CGGCCGGGGC GAGGCGCGCG CCGAGGCCAC GATCGGCCTG ATCCCGCCGG AGCAGGGTGC CGAGGTAATC GCCCGCCAGT TCGCGCATCG CGACGGCGAT TTCGCCTTGA TCCCGATGCG GCTCGCCGCG CTGGCCGGCC AGGACCGCAT GCCCTGGCTG CGTGCGCTGC TGGCCGAGCT GGTCGAGGCC GAGGCAGGCG CGACGGGCGC GAGCGGAGCA CCGCGCGTCG AGCGCCGCGC CGGCGGCACG GCCGGCGCGG CACTGCTGGC GGGCCTCGCG AGCCTCGATG CGGCGGCGCG CGCGGCGCGC CTGAAGCGCC ATCTCGAGGC CGCGATCCGC AAGCTGCTCA ACCGCGCCGA TACGCTCGAC GATCGCGCCA GCATGTTCGA TCTCGGTCTC GATTCGCTGC TCAGTATCGA CCTGCGCATG CAGCTCGAGA AGGACCTGGC CTGCAGCCTC TCGACCACGG TGCTGCACGA CCATCCGACC ATCGAGGCGC TGGCGGGCTT CCTGGCCGAA CGCGTGGGTG CGCCGCCGGC GGGGACGGTT CGCGCAGGGG CCGCGGGCGG TGCCGGTGCA GGCACCGGCG CGCCTGCCGG CGCCACTGGG GCCGCGGCTG CGCATGCCGT ATCGTCGGCC TCGCCCGTGC CGGCCGGGGC CGCGTCGGCC GCTGCATCCG CTGCATCCGC TGCAGCGGCA GCCGGCGCCC CGTCGCGCGC CACGTTCGCG GCCGAGCCGC GTCGTGCCGG CGGCGCGGCG CTGCCGCCCG GCGCCGGCCC CGACGACATC GCCATCATCG GCGTATCGGG CCGCTACCCC GGCGCGGCCG ACCTCGGCGC GTTCTGGGAC AACCTGCGCG ACGGCCACGA CGCGATCACC CCGATCCCGC CCGAGCGCTG GAACCACGAC GCCTACTTCG ACCGGCAGCG CAACGTGCCC GGCAAGAGCT ACAGCGCCTG GGGCGGCTTC ATCGAGGACG TCGACGCCTT CGACCCGGCC TTCTTCAGCA TCTCGCCGCG GATGTCGGCC TACCTCGATC CGAAGGAGCG GCTGTTCCTC GAGACGGTCT GGAACCTGCT GGAGGAGGCG GGCGAGACGC GCGAGCGCAT GCAGCAGGCC TATGGCGCGC AGGTGGGCGT GTTCGTCGGC GCGATGTACC AGCTCTATGG CGCCTGCGCG GCCGACGAGG GCGAGCGCGT GGCCACCGCG CTGTCCTCCT ACAACGCGAT CGCGCATCGC ACCTCGTACT TCTTCAACCT GCGCGGGCCG AGCATCGCGC TCGACACAAT GTGCTCGTCG TCGCTGACGG CGGTCCACTA CGCCTGCCGC AGCCTGCTCG ACGGCGACTG CGCGCTGGCC ATCGCGGGCG GCGTGAACCT GTCGCTGCAT CCGCGCAAGT ACGTCGGGCT GAGCCAGGCG CAGATCGTCG GCAGCCATGC CGACAGCCGC AGCTTCAGCG ACGGCGACGG CTACCTGCCG GCCGAGGGCG TGGGCGCCGT GCTGCTCAAG CCGCTGGCCC GCGCGCTGGC CGACGACGAC CGGATCCTGG CGGTGATCAA AGCCTCCTCG GTCAACCACG GCGGCCGCGC GACCGGCTAC TACGCGCCGA ACGCGAACGC CCAGGTCGAC CTGATGGAGG CCAGCTTCCG CAAGGCCGGC GTGTCGCCCG AGTCGATCGA CTACATCGAG GCCGCCGCCA ACGGCACCAG CCTCGGCGAC GCGGTCGAGC TGCGCGCGCT GGCGCGCGTG TTCGACGGCA CCGCGCGCGA CGGCCGGCGC GTGCCGATCG GCACTGTGAA GTCGAACATC GGCCATCCCG AGGCGGCCTC GGGCATCGCG CAACTGACCA AGGTGATCCT GCAGATGCAG CACGAGACGC TGGTGCCCTC GATCAAGACC GAGCCCGTCA ACCCCAACCT CGACCTGGCC CACACGCCGT TCCGCCTGCT CTCGCGGCAG GCGGCCTGGC CGTCCGATCC GGCGCGGCCG CGGCGCGCCA CGGTCAGCTC GTTCGGCGCG AGCGGCGCGA ACGCGCACCT GATCGTCGAG GCCTTCGAGA CGGTCGAGGC GGAGCCCGCG CCAGCCGTCG CGCAAGCGGC GCCGCCGGCC GAGATCGTGG TGCTGTCGGC GCGCACGCCG GCTCAGTTGC GCGAGGTGGC GCGGCGCCTG CTGGCCTGGC TCGCCACGCG GCAGGCGGCG GGCAGGGCGG AATCGGCGGT GCCGCTGGCC GAGCGCGGCC GCGCCTGCTC GCTCGCGAAT CTCGCGCACA CGCTGCAGAT CGGGCGCGAG GCGATGGACT GCCGGCTCGC GCTGCTGGCC GACAGCCTCG ACACGCTTGG CGATGGCCTG CGGCGTTTCC TCGGCGAATC GGCCGGCGCG GCCGAGCCCG CGATCTACCA CGGCAACGTG CAGGACCAGC TCGAGATGCG CAACCTGCTG GCGGGCGCCG CCGGCGACGC GATGGCGCAG ACCCTGGTGG CCGAACGCAA CCTGGAGGGG CTGATGCTGC ACTGGGTCCA GGGCGGCAAC GTGCCCTGGG CCGCCCTGCG CGAGGGCCGG CCGGCGCGCC GCCTGGTGCT GCCGACCTAT CCGTTCGAGC GCGAGCGCTA CTGGCTGTCC GGCGCGAGCG ACGCCGCGGG CCGCGGCGCG GGCGAGCCGC AGGTCCCTGC CGAGCCGGCC GAGGCGGCCA GCGAACCCAG TGTCGTCGAT GGGCGGGCCT GA
|
Protein sequence | MQDIQQLLAK SLTEIKRLKA ANQALEQARR EPIAIVGAAC RYPGGIGSLD QLWTALEAGR DGIRTMVGER WPMQRFLTDD PHRPGGIYSD AMGLLEAIDG FDAAHFGLRH DEAIHIDPQH RLLMEVAWEA FEDAGYAVDA FSGSRTGVYV GIMNDDYGQL QGPLEAASLY IGSGIAKSCA AGRLAYTFGL EGPTLALDTA CSSSLVGVHL AVQALRRGEC DAALAGGVNL ILSPQGTVVA CRSQMLSPSG RCRTFDASAD GYVRAEGCGL VLLKRLSDAE RDGDRILALV RGSAVNHDGR TQGLTAPSGQ AQRRVIAAAL ADAGVAAAEV GFVECHGTGT ALGDPIELRA LEASYVLEAG ERAPLVVGAL KSNLGHMESA AGIGGLHKAI QVVRHRRVPR NLHFETLNPQ IRVDLERLRI AAEAVAMPER ERALAGVSSF GFSGTNAHVI VEAYAPRDDR VGVDGSAHED AANAEAAPLQ LFRLAAHSGA ALADYARRYL DWLDDAHARQ ARLDPAALCY TAAVGRGEAG CRIALSFETL DDLRACLREY LDVAGGDPSE PVPKSCAAEW VIGGAADVDW RVAGALHAQP GFYRERVQQA WARLASRVPD GAAAFARLCA GGDAGLPADA TLPHTVHRWA LAQLLVHLGL QPARVSGHGA GEYVAAAVAG LVDWDTALGL AAGEALPAGF KAGRARCEFT SRFGTGELPE SWQRDGGPAA ADAAPLGDEA WPEHAQGIVV ELGAGLALRL GDAADERLFR WTHGRTNRDP ARPLEAFLAQ AYMAGLPVRW APLFEAQAPR RQSQPGYPFQ RERVWTDWGY SFDATLPSTV GRAGGGVAPR LPALATGLAA EPLDHPVLRS LFACPSGARN FSGELSLTAL PYLAAHRILG EIVLPASAQF DLIATAGRAC WPGQPLLIDE LQLPNRCVLG DEPLEVYCHL RPADGRVELH GRPRGAPGWT LHARARIAPD EAHAANAPAT VDPAAWRAAC AEPVPVRRHY HAIAQVGLEY EADFQGIFEL SRGTGCALAK IALPPGVDQS LDGYSTHPIL LDACLQAISA ASPPDAGGEL LIPAAMRGIH LFRPLPELIW CRVEVLADDG GRGTQHAKLT IVDMQGEPVM RIDRFETTRY TGAVAPAAEN WTHWLYDRHW VPAAPCAASS SSAERAARHW LLLSDGGTAC AALATVLAAR GDRVSVLGRE AAPADADGFG ALIDGAAADG GLDGVIHGWS LDGFDPEAHG PGHEAVSDEA LARCAQGPLW LCQAALAPGR RELALHFLTR GSQPAGGSRV RAPLAALAWG LVGSFVNEQR RPARLVDLDP DSRDGRADAA LLVQALHADG EETQYAVRGA RLLVARLRRA APLAAPAPVI DPEASYLITG GYGQLGIETA TALARQGARH LVLVGRDPSR AEGDPALAGL REMGVRLTPL AADVGERASF LPRLAECLRT LPPLKGVVHS AGSLDDGVLD DQDWGRYLAV FAAKVAGTLN LHHALRKHAL DFFVLYSSAA ALLGNPGQTN YAAANAFLDS FAAYRRGLGL AGLAIGWAGW AGGGMAAGRG EARAEATIGL IPPEQGAEVI ARQFAHRDGD FALIPMRLAA LAGQDRMPWL RALLAELVEA EAGATGASGA PRVERRAGGT AGAALLAGLA SLDAAARAAR LKRHLEAAIR KLLNRADTLD DRASMFDLGL DSLLSIDLRM QLEKDLACSL STTVLHDHPT IEALAGFLAE RVGAPPAGTV RAGAAGGAGA GTGAPAGATG AAAAHAVSSA SPVPAGAASA AASAASAAAA AGAPSRATFA AEPRRAGGAA LPPGAGPDDI AIIGVSGRYP GAADLGAFWD NLRDGHDAIT PIPPERWNHD AYFDRQRNVP GKSYSAWGGF IEDVDAFDPA FFSISPRMSA YLDPKERLFL ETVWNLLEEA GETRERMQQA YGAQVGVFVG AMYQLYGACA ADEGERVATA LSSYNAIAHR TSYFFNLRGP SIALDTMCSS SLTAVHYACR SLLDGDCALA IAGGVNLSLH PRKYVGLSQA QIVGSHADSR SFSDGDGYLP AEGVGAVLLK PLARALADDD RILAVIKASS VNHGGRATGY YAPNANAQVD LMEASFRKAG VSPESIDYIE AAANGTSLGD AVELRALARV FDGTARDGRR VPIGTVKSNI GHPEAASGIA QLTKVILQMQ HETLVPSIKT EPVNPNLDLA HTPFRLLSRQ AAWPSDPARP RRATVSSFGA SGANAHLIVE AFETVEAEPA PAVAQAAPPA EIVVLSARTP AQLREVARRL LAWLATRQAA GRAESAVPLA ERGRACSLAN LAHTLQIGRE AMDCRLALLA DSLDTLGDGL RRFLGESAGA AEPAIYHGNV QDQLEMRNLL AGAAGDAMAQ TLVAERNLEG LMLHWVQGGN VPWAALREGR PARRLVLPTY PFERERYWLS GASDAAGRGA GEPQVPAEPA EAASEPSVVD GRA
|
| |