Gene Bamb_5917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5917 
Symbol 
ID4314822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp400483 
End bp401430 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content75% 
IMG OID638153757 
Productphosphopantetheine-binding 
Protein accessionYP_777796 
Protein GI115360659 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3321] Polyketide synthase modules and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00147293 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGTGAGCG CACCGCGCCA GGCTGTGCTC CCTGCTTCCC CGACCGTTTC CAACCAGGCT 
GACGACGCCA TGACCCTCGC TACCCTGCAA GCCGCCGAGA CGGCGGACAT CATCGTGCTG
TCGGCGCCCG GCGTCGACGC GCTGCGCGGC GCCGTCTGGC AGCTGCTGGG CCAGCTGCGC
GCGCTCGCGA GCGACGCCGC GGCCGAGCCG TTCACGCTGG CTGACCTCGC CTACACGCTG
AAGTCGCGCC CCGAGGCCGG CGGCTGCCGC GTCGCCTTCG TGACGCGGCA GCTCGATGAC
CTCGCGGCCG GCCTCGAGCA CTACCTGCGC GCGCATGCGC AGGCCGAGGC GAGCGTGCCG
CGCAGCGTGA CGCCCGGCCG CCACGGCGAA CTGGTGACCA TCCTGCGCGG CGACCTGGCC
GCCGATTCGG GCACGGCGCG CCTGCTCACG GGCGCGGCGG CCGCGACCAT GGCGCGCGCG
CTGTGGGCCG CGCGCGACCT CGAGAACCTC GCGCTGATCT GGGTGCGCGG CGGCCAGCTC
GACTGGGACG CGCTGCGCGA GGGACCGCCG CCGCGGCGCC TCGCTTGGCC CGACCAGGCG
CCGCTCGAGG CCGGCGCGCG GCCGGCGCCG GAAGCCTTCG AGGGCGCCGC CGCGGGCGTC
TCGGCGGCCG GCATCGAGCC TGACCTGACG GCGATCTGGC AGGCGCTGTT CGCCCTGCCG
GCGGTTGGCC GCCACCAGGA TTTCTTCGCG CTCGGCGGCG ATTCGCAGCT GGGCCTGCGC
ATGCTGGCCC AGCTGCGTGA GCGCCACGGC GTCGACCTGC CGCTGCGTTG CCTCTACGAG
GCGCCCACCG TCGCCCGCCT GGCCGAGACG ATCGTGCGGC TCGCGGCGCC GGCGCCTTCG
GGCGACCAGG ACGATGCATC GGAGTACGAA GAAGGCGTGA TCCGCTGA
 
Protein sequence
MVSAPRQAVL PASPTVSNQA DDAMTLATLQ AAETADIIVL SAPGVDALRG AVWQLLGQLR 
ALASDAAAEP FTLADLAYTL KSRPEAGGCR VAFVTRQLDD LAAGLEHYLR AHAQAEASVP
RSVTPGRHGE LVTILRGDLA ADSGTARLLT GAAAATMARA LWAARDLENL ALIWVRGGQL
DWDALREGPP PRRLAWPDQA PLEAGARPAP EAFEGAAAGV SAAGIEPDLT AIWQALFALP
AVGRHQDFFA LGGDSQLGLR MLAQLRERHG VDLPLRCLYE APTVARLAET IVRLAAPAPS
GDQDDASEYE EGVIR