| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5908 |
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| Symbol | |
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| ID | 4314813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 389997 |
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| End bp | 391070 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638153748 |
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| Product | porin |
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| Protein accession | YP_777787 |
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| Protein GI | 115360650 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.359102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00179215 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGTTGC GTACCCCGCG CGCCCGATTT CGGGCAGGAT TCCTGATGGC CGGCGCGGCA
GGCGCCATTG GCGTCGCGCC GCTCGCGCAC GCGCAGTCGA GCGTGACGCT GTACGGCGTC
GCCGACGCTT TCGTCGGTTC GGTGAAGCAA CCCGGCGGGC GCACGGCGCT CGTGCAGTCG
GGCGGCGGGA TGACGACGTC GTTCTGGGGG CTCGGCGGCA GCGAGGATCT CGGCAACGGC
AACAAGGCGT TCTTCGTGCT CGAAAGCTAC TTTCAACCAC AAAGCGGCGC GTACGGCCGC
TACGCCGGGG ACAGCCTGTT TTCGCGCAAT GCGTACGCGG GATTGCAGTC GCGGTTCGGC
CAGCTTCGTC TTGGCCGGAT CACGACGCCG CTGTATCTCG CGACGATCCA GTTCAACCCG
CTGTTCAATT CGTACACGTT CTCGCCGATG ATCTTCCATA CGTTCAAGGG CGTGGGCGCC
GAGGGCGTGG TCGGCGATTC GGCGTGGAAC AACGCGCTCG CCTATACGAG CCCGACGTTC
GGCGGATTCA ATGCGGGGCT GCTGTATGCA CTCGGCAATA CGGCCGGCCG GAACGGCGCG
AAGAAATGGA GCGTCAACGC GAACTACGCG CGCGGCGCGT TCGCGGCCGC CGTGGTCTTC
CAGTACGTGA ATTTCAGCGC GACGCCTGGC GATCTCGACG GCGCGCTCGC CGCGGCGCCG
GGCCTGTCGA GCCAGCGCAC GGTGCAGGTC AGTGCGTTGT ACGACTGGCG TGTCGTGAAG
CTGTTCGCGC AGTACATGAA CGTCGCGAAC CGCGCGCAGC GCGGCAACTT CCACGGCGAT
ACGGTGCAGG CCGGCGTCAG CGTGCCAATA GGCGTGGGTT CGCTGCTGGC GAGCTACGCG
TATACGCATT CGAGCGGGGC GCTCGCCGAC GGCGCGCATC GCAGCACCGG CGCGCTCGGC
TACGACTATC TGCTGTCGAA GCGCACCGAC CTCTATTCGG CGATCAAGGT CGATCACGTC
GGCGGGCTGT CGACCGGCAT CACGTACGGC GCGGGCCTGC GCACGCGTTT CTGA
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| Protein sequence | MTLRTPRARF RAGFLMAGAA GAIGVAPLAH AQSSVTLYGV ADAFVGSVKQ PGGRTALVQS
GGGMTTSFWG LGGSEDLGNG NKAFFVLESY FQPQSGAYGR YAGDSLFSRN AYAGLQSRFG
QLRLGRITTP LYLATIQFNP LFNSYTFSPM IFHTFKGVGA EGVVGDSAWN NALAYTSPTF
GGFNAGLLYA LGNTAGRNGA KKWSVNANYA RGAFAAAVVF QYVNFSATPG DLDGALAAAP
GLSSQRTVQV SALYDWRVVK LFAQYMNVAN RAQRGNFHGD TVQAGVSVPI GVGSLLASYA
YTHSSGALAD GAHRSTGALG YDYLLSKRTD LYSAIKVDHV GGLSTGITYG AGLRTRF
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