Gene Bamb_5883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5883 
Symbol 
ID4314789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp362818 
End bp363285 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content64% 
IMG OID638153724 
Productlytic transglycosylase, catalytic 
Protein accessionYP_777763 
Protein GI115360626 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.161206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGAC TATTCACGCC CAAGCCGGCG CTCGCGCTGG CGCTTGCCGT TCTGTCCGTG 
CGGCCCGCCG AAGTGCGCGC GCAGACCGCC GACTGCTTTG CGGCGGCCGC CGCCTATCAA
CATGTGAGCC CCGTCGTGCT GCGCGCGATC GCGTGGCAAG AATCGCATGG CAACGCGAAC
GCGCTCCATC GCAACCGGAA CGGTTCGACC GATTACGGCA TGATGCAGAT CAACTCGATT
CACCTTCCGC TGCTGTCGCG CTATGGCGTC TCGGCCGACG ACCTCATGAA CCCATGCTTG
AGCGTGTACG TGGCTGCGTG GCACCTGCAC AAGATGATGG TCAAGTACGG GAATAACTGG
GCGGCGATCG GTGCCTACCA TTCGGAGACA CCTGCCGAGC GCGACCGCTA CGCGCGTTCG
GTGCAAAGCA TCGTCGAGCG CATGAAGCTC GCGGATGACG GGCAGTAG
 
Protein sequence
MMRLFTPKPA LALALAVLSV RPAEVRAQTA DCFAAAAAYQ HVSPVVLRAI AWQESHGNAN 
ALHRNRNGST DYGMMQINSI HLPLLSRYGV SADDLMNPCL SVYVAAWHLH KMMVKYGNNW
AAIGAYHSET PAERDRYARS VQSIVERMKL ADDGQ