| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5871 |
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| Symbol | |
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| ID | 4314777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 346678 |
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| End bp | 348363 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638153712 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_777751 |
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| Protein GI | 115360614 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCTGGA AGGCGTCGAT CGTCGATTAC GAAGCGCAGG GCAAGGACAT CAAGGATGTG
CTGCGCGACT TCGGCGCGAG CCAGGGCATC CCCACGCGCA TCGCCGCCGA TGTGAGCGGC
ACCGTGAGCG GCAAGTTCCA TCTGCCGCCG CGGCGCTTTC TCGATACGCT CGCGTCGTCG
TTCGGCTTCG TGTGGTACTA CGACGGCGAA GTGCTCGACA TCACGACGGC CGCCGAACTG
CAGAGCACGC TCGTGAAGCT CGATTCGGCC GATACGGGCG CGCTGCGCGA TGCGCTCGAC
CGCCTGCGCA TCTCGGACGA GCGCTTTCCG ATCGTCTACG ACAGCGCGCA GGGCACGGCG
CTCGTGAGCG GGCCGCCTCG CTACGTGCAG ATGGTGACGA ACGTGGCCTC GCGGCTCGAC
AACAACGCGG CGCATCGAAG CGGCACGCAG GTACGCGTCT TTCCGCTCTT TCACGCGTGG
GCACACGACC GCACGGTGCC CATCGACGGC CGGCAGGTCA CGCTGCAGGG CGTGGTGGCC
GTACTCAACG GCATCTACCA CCCGCACATG GCCAAGGCCG CCGACAAGCG CGGCGGCGAG
GGCGAGGGCG GCCGCCCGGC GGGCGGCGTG AAGCGCAACA CGCCGATCAA CGACGTGAAC
GGCAATGCCT ACAACGGCCC GTACATTCCG CCGCCGGTGC CGTCGGGCGC GGCCGGCAAG
GGCATGTTCG CCGGGCTCAC CGGGCAGCCG TCGCCGGCCG TGGCGGCGGC GGTGGGCGAG
CCGCCGCCGC CGCAGAACAC GAGCACGGCG CCGGCGAGCG ACGATCAACT GCCCGTCATC
GTCGCGGACC AGCGCACGAA CTCCGTCGTG ATTCGCGATA CGGCCGACCG GATGGATCAG
TACGGCAAAC TGATCGATCG CCTCGACGTC AAACCGCAAC TGATCGAGAT CGAGGCGCAC
ATCATCGAGA TCGACGACGA CGCGCTGCGT CAGCTCGGCG TCGACTGGAC CGCGCACAAC
AGCCACATCG ACGTGCAGAC CGGTACCGGC ACGCTCGGAC AGAACACCTA CAACGGCACG
CTCTCGCAGA ACTTCGGCCA GACCGCGCTG GCGGGCAACG TGCTCGCGGC GGCAACGCCC
GTGGGCGCAT CGGTGGCCGC GGTGCTCGGC GACGCCGGCC GCTATCTGAT GGCACGCATC
TCGGCGCTGC AGGAGACGAA GGCCGCCAAG ATCGACGCGA GCCCGAAGGT CGTCACGCTC
AACAACATCG AGGCCGTGAT GGACAACCAG ACGCAGTTTT TCGTGCCGGT GTCGGGATAC
ACGTCGGGCG ATCTCTACAG CGTGTCGACG GGCATCTCGC TGCGTGTGCT GCCGATGGTC
GTGGAGGAGG ATGGGCGCAC GCGTATCAAG CTCGACGTGG CGATTCAGGA CGGCCAGCTC
ACCGATCGGA CGGTCAGCAA CCTGCCGGTG ATCCAGAACA GTACGATCAA CACGCAGGCG
TTCATCGAGG AGGGGCAGGC GCTGCTCATC GCCGGCTATC GCGCGGACAG CGCGACGATG
GGCGTGACTG GGGTGCCCGG GCTCTCGAAG ATTCCGTTGA TCGGCGCGCT CTTCAGGACC
GACAGCCGCC AGAAGAGCCA CATGGAGCGG CTCTTCCTGC TGTCGCCGCG CGTCATCTCG
CCGTGA
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| Protein sequence | MRWKASIVDY EAQGKDIKDV LRDFGASQGI PTRIAADVSG TVSGKFHLPP RRFLDTLASS
FGFVWYYDGE VLDITTAAEL QSTLVKLDSA DTGALRDALD RLRISDERFP IVYDSAQGTA
LVSGPPRYVQ MVTNVASRLD NNAAHRSGTQ VRVFPLFHAW AHDRTVPIDG RQVTLQGVVA
VLNGIYHPHM AKAADKRGGE GEGGRPAGGV KRNTPINDVN GNAYNGPYIP PPVPSGAAGK
GMFAGLTGQP SPAVAAAVGE PPPPQNTSTA PASDDQLPVI VADQRTNSVV IRDTADRMDQ
YGKLIDRLDV KPQLIEIEAH IIEIDDDALR QLGVDWTAHN SHIDVQTGTG TLGQNTYNGT
LSQNFGQTAL AGNVLAAATP VGASVAAVLG DAGRYLMARI SALQETKAAK IDASPKVVTL
NNIEAVMDNQ TQFFVPVSGY TSGDLYSVST GISLRVLPMV VEEDGRTRIK LDVAIQDGQL
TDRTVSNLPV IQNSTINTQA FIEEGQALLI AGYRADSATM GVTGVPGLSK IPLIGALFRT
DSRQKSHMER LFLLSPRVIS P
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