| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5868 |
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| Symbol | |
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| ID | 4314774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 343131 |
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| End bp | 344558 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638153709 |
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| Product | type II/III secretion system family protein |
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| Protein accession | YP_777748 |
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| Protein GI | 115360611 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.231603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGG CACGCATGCG AGCGCTCGCG CGCGGCGCCG TCGCTGCCTT CGCCTGCGCG
GCCGCTGTGC ATGCGCAGGC GGCGAGCATG GAGTGGGCCG GCGGCCCCGG CGCCCGCTTC
GTCTACGTGA CGAACGGCGC GGGCCTCGCG GAGGTCCTGA ATGCCTTCGC AGCGGGGCAG
CACGTTGCCC TGCGCATCGA CGGTCAAGTG GAGGGTGTCG TGAGCGGCCG CTTCGCCATG
CCGCCGCAGC GCTTTCTCGA TGTCATGAGC CGTTCGTACG GATTCGTCTG GTACTACGAC
GGTGCGGTCC TGCATGTGTC GCCCGCGAAC GAGCAGGCGC ATGTCGCCAT CCGGCCTCAC
TTTCTTTCTG CGAAAGGGCT GCGTGCGTCG CTCGAGCAGG CAGGTCTTGC CGATACGCAC
TTCCCGTTGG CGGTGGATGC CGCCGCGCAA ACGGTGGACG TGCGCGGGCC AGCGACCTAC
GTGGAGCGTA TTCGTGCCGC GGCCGAGCGC TTCGAGCGCG ACGCGCAAAA GCGCGTGCGT
TTGTCCGTGC GGGTGTTTCG CCTGAGTGCC GCGAATGCCG CCGACGAAAC GCGCGTGGTC
GATGGCCGCA CGCTCGTCGT GCCCGGTGTG GCCACGCTCT TGCGGCGCCG TTTCGAGCAC
CCGGCCGTGG CGAGCGGGAC CGCCGTTTCC GATGCACCGC GGATCGTCGA GTTCGATGCG
GCGTTGCCGG CGATCGAAGC GGATGCGACC ACGAATTCCA TCCTGATACG CGATCGGGCC
GAGCGCATCG ACGCCGACGG CGCGCTCGTC GCCAGCCTGG ACGTGCGTGC GCAGCTCGTA
TCGGTCCAAA CGTGGGTGGT GGATGTCGAC GGCGACGCGC TCGACGCGTT GCGGCCCGCG
CTGCCGCCGG CCCTGGCCGA CGGGGCAGGC GCGGCGCAGG CGACGGCGGA CGCGCGCGAG
CACCGCGATG CAGGTATCGC GCCCGACGGC GGCCGCGCGC TGCTCGCGCA GCTCAAGGCA
TTGGCCAGGA GCGGCCGCGC CGAAATCCAG GTGTCGCAAA CGGCGCTGAC GCACGACCGC
TCGCCGGCCG TCATCGACCG CCACGAGGCA CGTCTCGCAC GCCGCGATGA GGATGACCGG
CCCGATGACG GCGCCCGCGA TCTCTGGCTC TCGATTGCAC CGACGGTCGA AGGCGCCGCG
TCGATGCCGC GTATCGGCTT GCGCGTGGAA CTGGGGCGCC GCCGCGATGC GCGCGGCTAT
CGGGCCGTCG ACGAAAGCCT GGCGCCGGGC GAGTGCCTCG TCATCGAGGG ACCGGCGCGG
CACAGGGGCG ATGTCGAGCG TCGCGCGGAC GATACCGATT CCGGCGGTGC GGGAGAGGGG
GGCATGCGCC GCCGCCTCGT CTTGCTGATA CCGCGCGTGG CGGCATAG
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| Protein sequence | MSAARMRALA RGAVAAFACA AAVHAQAASM EWAGGPGARF VYVTNGAGLA EVLNAFAAGQ
HVALRIDGQV EGVVSGRFAM PPQRFLDVMS RSYGFVWYYD GAVLHVSPAN EQAHVAIRPH
FLSAKGLRAS LEQAGLADTH FPLAVDAAAQ TVDVRGPATY VERIRAAAER FERDAQKRVR
LSVRVFRLSA ANAADETRVV DGRTLVVPGV ATLLRRRFEH PAVASGTAVS DAPRIVEFDA
ALPAIEADAT TNSILIRDRA ERIDADGALV ASLDVRAQLV SVQTWVVDVD GDALDALRPA
LPPALADGAG AAQATADARE HRDAGIAPDG GRALLAQLKA LARSGRAEIQ VSQTALTHDR
SPAVIDRHEA RLARRDEDDR PDDGARDLWL SIAPTVEGAA SMPRIGLRVE LGRRRDARGY
RAVDESLAPG ECLVIEGPAR HRGDVERRAD DTDSGGAGEG GMRRRLVLLI PRVAA
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