| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5861 |
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| Symbol | |
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| ID | 4314767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | + |
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| Start bp | 338433 |
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| End bp | 339089 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638153702 |
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| Product | type III secretion system protein |
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| Protein accession | YP_777741 |
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| Protein GI | 115360604 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAGT TTAGCGATCT CACCGGGCTG CTGATCACCG TCGTCGCGAT CAGCCTGATC
CCGTTCGTCG CCATGGTCGC GACCTCGTAC GCGAAGATCG TGGTCGTGCT CGGGCTGTTG
CGCAACGCGC TCGGCGTCCA GCAGGTGCCG CCGAACATGG TGCTCAACGG CATCGCGGTC
CTCGTCTCCG CTTACGTGAT GGCGCCGATC GGCATGCAGG CCATGCAAAC CATGCAGACG
ATGCACCGCA CCCCCGGCAG CGATACGTCG CTCGTCGTGC TCGATGCCTT CGATGCGGCA
AAGGAGCCGT TTCGCGCCTT TCTGAAGAAG CACGCGCACG AGCGCGAAAA GCGGTTCTTC
GTGCGCTCGG CAACCGTGGT CTGGCCGAAG GACATGGCGG CGAAGATCCG TGAGGACGAC
CTCATCGTCC TCGCCCCGGC CTTCACGCTG ACCGAGATGG CCGACGCGTT CAAGATCGGC
TTTCTGCTGT ACATCGCATT CATCGTCGTC GATCTCGTCA TCGCCAACGT GCTGATGGCG
ATGGGCCTGA ATCAGGTCCA GCCGACGAAC GTCGCGATCC CGTTCAAGCT GCTCTTGTTT
GTCGTCATGA GCGGCTGGTC CACATTGATT CACGGTCTTG TCATGACCTA TCGCTGA
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| Protein sequence | MVQFSDLTGL LITVVAISLI PFVAMVATSY AKIVVVLGLL RNALGVQQVP PNMVLNGIAV
LVSAYVMAPI GMQAMQTMQT MHRTPGSDTS LVVLDAFDAA KEPFRAFLKK HAHEREKRFF
VRSATVVWPK DMAAKIREDD LIVLAPAFTL TEMADAFKIG FLLYIAFIVV DLVIANVLMA
MGLNQVQPTN VAIPFKLLLF VVMSGWSTLI HGLVMTYR
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