| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5858 |
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| Symbol | |
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| ID | 4314764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | + |
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| Start bp | 334401 |
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| End bp | 336377 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638153699 |
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| Product | HrcV family type III secretion protein |
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| Protein accession | YP_777738 |
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| Protein GI | 115360601 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.664408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGA CCATCAAGCT GCCCGGCATC GGCGAGGCCG GCATCGCCAT CCTGCTGATC
GCGATCGTCT CGCTGATGAT CCTGCCGCTG CCGCCCGCCA TCATCGATGG TTTGCTCGCC
ATCAACATCG CGATCAGCAT CACGCTGCTC ATGGTGACGA TGTACGTCGG CCATATCGCG
ACGCTGTCGG CGTTCCCGTC GGTACTGCTT TTCACGACGC TTTACCGGCT CTCGCTGAAC
ATCGCATCGA CGAAGTCGAT CCTGCTGCAT GCCGATGCCG GCGAAATCAT CGAGAGCTTC
GGGCAGCTCG TCGTGGGCGG CAATCTCGTC GTCGGCCTTG TCGTGTTCGT CATCATTTCG
GTCGTGCAGT TCATCGTCAT CGCCAAGGGC TCGGAACGCG TCGCCGAAGT GGGGGCGCGC
TTCACGCTCG ATGCGCTGCC CGGCAAGCAG ATGAGCATCG ACGCCGATCT GCGCGCGAAC
ATCCTGACAC CGGAGGAGGC GCGCAGCAAA CGCGCGCGGC TCGCTATCGA AAGCCAGCTG
CACGGCGGCA TGGACGGTGC GATGAAGTTC GTGAAAGGCG ATGCGATCGC CGGCCTCATG
ATCACGATGA TCAACATCGT CGCGGGCATT GCCGTGGGCG TCGCCTATCA CGGCATGTCC
GCCGGCGAGG CGGCCAACCG CTTCTCGGTC CTCTCGATCG GCGACGCCAT GGTCTCGCAG
ATTCCGTCGC TGCTGATCTC GGTGGCCGCG GGCGTCATGA TCACGCGCGT GGACGAAGGC
GGCGAGCACG GCAACGCCTC GCTCGGCGAG GACATCCGGC GCCAGTTTAC GAGCAGCTCG
CGCGCGCTCT ACTTCGCGTC GCTGCTGCTG CTCGGTTTCG CGGCCGTGCC CGGATTTCCG
GCGGCGCTCT TCGCGTTGCT CGCCGGGCTG CTCGGCTTCG TCGGCTACCG TCTGCAGAAA
AAGCAGCACG GCACGGCCAA AGGCGGCGGC AAGCCCGTCG TCGCGCTGCA GCGTGCCGGC
GCCAGGGGCG ACGCGCCCTC GATCCTGCCG CGCCCGCCGC AGTTCACCTG CCCGCTCGGC
GTGCGGCTCG CAGCCGATGT CAGCGCGCGT CTCGCGGCCG ACGCGCTCGA CCGCGCGTTC
GATGTGCAGC GCCATGCGCT GCAGTCGGAA GTCGGCCTGC CGTTCCCGGG CATCATGATG
TGGACCGACG GCAAGCTGCC CGAGGACAGT TACGAAGTGC TCATCTTCGA CGTGCCGCAA
GGGCGCACCA CGCTCGCCGA AACGCGAGCG GTACACGCGG CGGCCGACGG CGCCGCCGCG
GGCGCACCTG CCGCCGCGCC GACACCGGAA GCATTGATCG CTCGCCACAC GATCGACCTG
CTGCGGCGCA ATGCCCATCT CTTTCTCGGC ATCCAGGAAG CGCAGTGGAT GCTCGATCAG
CTCAACGAGG ACTACCCGGG CCTCGTCGCC GAGGTGCAAA AGGCGCTGCC GCTGCAGAAG
ATGGCGGACG TGCTGCGCCG GCTGCTGGAG GAGGACGTGC CCGTGCGCAA CATCCGCAGC
ATTACCGAAA GCCTGATCGT CTGGGGGCCG AAGGAGAAGG ACATGCTGAT GTTGACCGAA
TACATCCGCA TGGAGCTCGG CCGGCTCATC GCCTATCGCG CGACGGGCGG CCCACGGGAT
CTGCCCGTCC TGCTCGTGGA CGTTCAGTTG GAGCAGCACA TCCGGCAGTC GATCAAGCAG
ACGCCCACGG GCAACTTCCT CGCGCTGCCG CCCGACGAGA TCGCCGGGCT CGTCGGCAAG
ATCGCGGAGC TCGTCGGCGA CACGCCACGC CAGCCGCTCG CGCTCGTCGC GTCGATGGAT
ATCCGGCGCT ACATCAAGCG CATGATCGAG GCGCGGCTGC CCTGGCTGCC CGTCTACTCG
TATCAGGAGC TCGGCGCTCA CGTCGATCTC CAGCCCGTCG GCCGCCTGGC GATGTGA
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| Protein sequence | MLKTIKLPGI GEAGIAILLI AIVSLMILPL PPAIIDGLLA INIAISITLL MVTMYVGHIA
TLSAFPSVLL FTTLYRLSLN IASTKSILLH ADAGEIIESF GQLVVGGNLV VGLVVFVIIS
VVQFIVIAKG SERVAEVGAR FTLDALPGKQ MSIDADLRAN ILTPEEARSK RARLAIESQL
HGGMDGAMKF VKGDAIAGLM ITMINIVAGI AVGVAYHGMS AGEAANRFSV LSIGDAMVSQ
IPSLLISVAA GVMITRVDEG GEHGNASLGE DIRRQFTSSS RALYFASLLL LGFAAVPGFP
AALFALLAGL LGFVGYRLQK KQHGTAKGGG KPVVALQRAG ARGDAPSILP RPPQFTCPLG
VRLAADVSAR LAADALDRAF DVQRHALQSE VGLPFPGIMM WTDGKLPEDS YEVLIFDVPQ
GRTTLAETRA VHAAADGAAA GAPAAAPTPE ALIARHTIDL LRRNAHLFLG IQEAQWMLDQ
LNEDYPGLVA EVQKALPLQK MADVLRRLLE EDVPVRNIRS ITESLIVWGP KEKDMLMLTE
YIRMELGRLI AYRATGGPRD LPVLLVDVQL EQHIRQSIKQ TPTGNFLALP PDEIAGLVGK
IAELVGDTPR QPLALVASMD IRRYIKRMIE ARLPWLPVYS YQELGAHVDL QPVGRLAM
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