Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5857 |
Symbol | |
ID | 4314763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 333337 |
End bp | 334395 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638153698 |
Product | type III secretion system protein HrcU |
Protein accession | YP_777737 |
Protein GI | 115360600 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACG AGAAAACCGA AGAGCCCACA GACAAGAAGC TGGACAAAGT CCGCGAGGAA GGTCAGGTCG CGAAGAGTTC CGACCTCGTC GAAGTCGCGT CGCTGGGCTC GATCGTGCTC GTGCTGACGG CGGGCCAGCA CTACCTTGCC GATACGCTGC GCGCGGTCGT CAAGGAGGCG ATCGATTTCA CGCACGGCCC GCGCGAGTTG CAGGACCTCT CGGTCGCGCT CGTTCATATG GGCGTGCAGG CGCTCGGCCT GCTGTGCGGG ATCGCGGCCG TCGCGCTCGT CGCGGCCTTC CTCGCGCTTG CCCCGCAAAC GGGGCTCAAG ATCTCGCTGA AAGCCGTCAT GCCGAAGCTC GCGTCGGTCA GCCCCGGGTC CGGCTTTCAG CGGATCTTCT CGATGAACTC GGCCATCGAT CTCGTCAAGA TGGTCGTCAA GGCCGCGATT CTCGTCGCCG TCATGTGGCA GACGATCAAA AGCGCGATGC CCGTCGTCGC GAGCGCGCTC GACCGGTCGG TACCCCAGTT GATCGCCGTG CTGTGGTCCG TGCTCATGCA TGTCGTCGTC GTCGCGCTCG GCGTGTTCAT CGCCATCGGC GCATTCGACT ACAAGCTGCA GAAGTGGCTC TTCATCCGCA AGAACCGGAT GTCGAAAGAC GAGGTGAAGC GCGAGCACAA GGAAAGCGAC GGCAACCCGG AAGTCAAGGG CGAACGCAAG CGCATGGCCA GGGAAATGTC GCAGGAAGGC CCGAAAGGCG GCGTATCGCG CGCGAACGTC GTGGTCGTCA ACCCGGTTCA CTACGCGGTC GCGCTGCGCT ACGACCCGAC GGAGTTTCCG CTGCCCGTCG TGCTCGCCAA GGGCGTCGAC GAACAGGCGC TGCGGCTGCG CCAGCAGGCG ATGCACGCGC GCGTGCCCAT CGTCGCGAAC CCGCCCGTCG CGCGGATGCT GCACAAGGTA CCGCTCAATC AGCCGATTCC CGAAGAACTG TTCGAAGTCG TCGCCGCGAT TCTTCGCTGG GTGGACGGCC TCGCGCCTCA AACCGCCATC ACGGAGTAG
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Protein sequence | MSDEKTEEPT DKKLDKVREE GQVAKSSDLV EVASLGSIVL VLTAGQHYLA DTLRAVVKEA IDFTHGPREL QDLSVALVHM GVQALGLLCG IAAVALVAAF LALAPQTGLK ISLKAVMPKL ASVSPGSGFQ RIFSMNSAID LVKMVVKAAI LVAVMWQTIK SAMPVVASAL DRSVPQLIAV LWSVLMHVVV VALGVFIAIG AFDYKLQKWL FIRKNRMSKD EVKREHKESD GNPEVKGERK RMAREMSQEG PKGGVSRANV VVVNPVHYAV ALRYDPTEFP LPVVLAKGVD EQALRLRQQA MHARVPIVAN PPVARMLHKV PLNQPIPEEL FEVVAAILRW VDGLAPQTAI TE
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