Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5852 |
Symbol | |
ID | 4314758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 329162 |
End bp | 330169 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 638153693 |
Product | HrpE/YscL family type III secretion apparatus protein |
Protein accession | YP_777732 |
Protein GI | 115360595 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGATCT GGTTACGTAA TCCGCAGGCC GAAGGCACGG GCCTCGGCGT GGGTGCCGAA GGCGACGTGC TGCGTCATGC AGATCTCGCG GCGATCGTCG AGATCGATGC GGCGTATGCC GAGATGCATC GCCAATGCGA CGAGGCGCTG GACGTGGCGC GCGCCCGAGC GCGCATGCTG CTCGACGATG CGCAGGCCCG CGCGGACGAC CTCGTCGAGC GAGCCATGCG CGAGTTTGCG CAGGCGGCCG AGCGGGGTTA CGACGACGGC TTGCGGCGCG GGCTGGCCGA TTGGCACGAA CGCGCGGCGG CGGCGCGCGC CGAAGCCTGC CGGATCGAGC CCGCGCAGCA GAACCGGCTG GCCGAACTCG TGACGCTTGC GGTGGAGCAG ATCATTGCGT CGGCGGATCC CAAGGCGCTC TTCGCGCGCG CGGCCGCGAC GGTCGAGCGC ATCGTCGCGG ACGGCAGCCC GATTCATCTG CGCGTTCATC CGTCGGATCT GGCCGCGGCG AGCGCGGCGT TCGAGGAAGC CGCGTTGGCA TGGCGCGAGG CCGGGCGCGC CGTGCGGCTG CGCGCCGTGG CCGATGTGGC GCTGGCGCCT GGCGCGTGCA TCGCCGAAAC CGATCTCGGT GCGATCGACG CGAGCTTGTC GTTGCACCTG GCCGCGATGC GCGGCGCACT GGCGCGCGCG GTGCGCAGCG TGGCGCCGGC ACCCGGGTGT GACGCGCCCG ATGCGCGGCC GGAGGATGAT GCACACGTCT CCGACGAACG CGATTTCGGC GCGTTGGCGG ATGTCGCGGC GCACGCCGAT ACGCTGACCG GCGAGCACGC CATCGGCGCT GGCGAGGGCC GCGACGAAGC AGATGAACGC GCTGGCGACG ACGCGGGCGG GAACATCGGC GTCGAAGCAG GCTGGCAAGA CGGTGGCGCC ATGCAAACGG CGGCCGACCT GCCGGCCGAC GGTTCGGCCG ACGTCGCGCA TGAAGACGCC GACGCGATGT CCATCTGA
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Protein sequence | MVIWLRNPQA EGTGLGVGAE GDVLRHADLA AIVEIDAAYA EMHRQCDEAL DVARARARML LDDAQARADD LVERAMREFA QAAERGYDDG LRRGLADWHE RAAAARAEAC RIEPAQQNRL AELVTLAVEQ IIASADPKAL FARAAATVER IVADGSPIHL RVHPSDLAAA SAAFEEAALA WREAGRAVRL RAVADVALAP GACIAETDLG AIDASLSLHL AAMRGALARA VRSVAPAPGC DAPDARPEDD AHVSDERDFG ALADVAAHAD TLTGEHAIGA GEGRDEADER AGDDAGGNIG VEAGWQDGGA MQTAADLPAD GSADVAHEDA DAMSI
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