Gene Bamb_5852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5852 
Symbol 
ID4314758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp329162 
End bp330169 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content72% 
IMG OID638153693 
ProductHrpE/YscL family type III secretion apparatus protein 
Protein accessionYP_777732 
Protein GI115360595 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1317] Flagellar biosynthesis/type III secretory pathway protein 
TIGRFAM ID[TIGR02499] type III secretion apparatus protein, HrpE/YscL family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGATCT GGTTACGTAA TCCGCAGGCC GAAGGCACGG GCCTCGGCGT GGGTGCCGAA 
GGCGACGTGC TGCGTCATGC AGATCTCGCG GCGATCGTCG AGATCGATGC GGCGTATGCC
GAGATGCATC GCCAATGCGA CGAGGCGCTG GACGTGGCGC GCGCCCGAGC GCGCATGCTG
CTCGACGATG CGCAGGCCCG CGCGGACGAC CTCGTCGAGC GAGCCATGCG CGAGTTTGCG
CAGGCGGCCG AGCGGGGTTA CGACGACGGC TTGCGGCGCG GGCTGGCCGA TTGGCACGAA
CGCGCGGCGG CGGCGCGCGC CGAAGCCTGC CGGATCGAGC CCGCGCAGCA GAACCGGCTG
GCCGAACTCG TGACGCTTGC GGTGGAGCAG ATCATTGCGT CGGCGGATCC CAAGGCGCTC
TTCGCGCGCG CGGCCGCGAC GGTCGAGCGC ATCGTCGCGG ACGGCAGCCC GATTCATCTG
CGCGTTCATC CGTCGGATCT GGCCGCGGCG AGCGCGGCGT TCGAGGAAGC CGCGTTGGCA
TGGCGCGAGG CCGGGCGCGC CGTGCGGCTG CGCGCCGTGG CCGATGTGGC GCTGGCGCCT
GGCGCGTGCA TCGCCGAAAC CGATCTCGGT GCGATCGACG CGAGCTTGTC GTTGCACCTG
GCCGCGATGC GCGGCGCACT GGCGCGCGCG GTGCGCAGCG TGGCGCCGGC ACCCGGGTGT
GACGCGCCCG ATGCGCGGCC GGAGGATGAT GCACACGTCT CCGACGAACG CGATTTCGGC
GCGTTGGCGG ATGTCGCGGC GCACGCCGAT ACGCTGACCG GCGAGCACGC CATCGGCGCT
GGCGAGGGCC GCGACGAAGC AGATGAACGC GCTGGCGACG ACGCGGGCGG GAACATCGGC
GTCGAAGCAG GCTGGCAAGA CGGTGGCGCC ATGCAAACGG CGGCCGACCT GCCGGCCGAC
GGTTCGGCCG ACGTCGCGCA TGAAGACGCC GACGCGATGT CCATCTGA
 
Protein sequence
MVIWLRNPQA EGTGLGVGAE GDVLRHADLA AIVEIDAAYA EMHRQCDEAL DVARARARML 
LDDAQARADD LVERAMREFA QAAERGYDDG LRRGLADWHE RAAAARAEAC RIEPAQQNRL
AELVTLAVEQ IIASADPKAL FARAAATVER IVADGSPIHL RVHPSDLAAA SAAFEEAALA
WREAGRAVRL RAVADVALAP GACIAETDLG AIDASLSLHL AAMRGALARA VRSVAPAPGC
DAPDARPEDD AHVSDERDFG ALADVAAHAD TLTGEHAIGA GEGRDEADER AGDDAGGNIG
VEAGWQDGGA MQTAADLPAD GSADVAHEDA DAMSI