| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5835 |
|---|
| Symbol | |
|---|
| ID | 4314741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 310724 |
|---|
| End bp | 311479 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638153676 |
|---|
| Product | histidine utilization repressor |
|---|
| Protein accession | YP_777715 |
|---|
| Protein GI | 115360578 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.926396 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA CGGAACGATA CACACCGGCG CGTCGGGCGG GCACGTCGGG CGACGACGTG
CCGGCACGCG CGCTGCCGGC GTACCAGCAG ATCAAGCGCT ACGTCGTCGA GCGGATCGCG
AAGGGCGACT GGAAGCCCGG CGGCGCGATT CCGACCGAGG CCGAGCTGGT CAAGGAATTC
GGCGTCGCAC GGATGACGGT GTCGCGCGCG CTGCGCGAGC TGACCACCGA GCGCGTGCTG
ACGCGCATCC AGGGCGCCGG CACGTTCGTC GAGCGCCGGC ATTACGAATC GACGGTGCTG
GAGATCCGCA ACATCGCGGA CGAGATTGCC GAACGCGGTC ATCGGCACAG CGCGCGCGTG
TTGCTGCTGG AGCGTAGCGT CGAGCCGGAG GCGATCGAGG CGCTGGCGCT TCGCACGGGG
CCCGTGTTTC ATTCGCGCAT CGTGCATTAC GAGGAGGACG AGCCGATCCA GTTCGAGGAT
CGCTACGTGA ATCCGGCGTT GTTTCCCGAC TACCTGGAGC AGGATTTCAC GCTCGAGACG
CCGAATCACT ACATGGTGCG GCTCGCGCCG ATCCAGCGCG CGGAGTTCCG GATCTACGCG
GAGAAGCCGA ATGCGCAGGT GCGTCGGCAT CTCGTCATGG AGATCGGCGA ACCGTGTCTG
CTATTGCGGC GCCGCACATG GGTCGGCGAG CAGGTCGCCA CGTCGGTGAG GCTGTGGCAT
CCGGCATCGC GGTTCCATCT GGCGGGGAAG ATGTAG
|
|---|
| Protein sequence | MNETERYTPA RRAGTSGDDV PARALPAYQQ IKRYVVERIA KGDWKPGGAI PTEAELVKEF
GVARMTVSRA LRELTTERVL TRIQGAGTFV ERRHYESTVL EIRNIADEIA ERGHRHSARV
LLLERSVEPE AIEALALRTG PVFHSRIVHY EEDEPIQFED RYVNPALFPD YLEQDFTLET
PNHYMVRLAP IQRAEFRIYA EKPNAQVRRH LVMEIGEPCL LLRRRTWVGE QVATSVRLWH
PASRFHLAGK M
|
|---|
| |