| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5743 |
|---|
| Symbol | |
|---|
| ID | 4314650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 195822 |
|---|
| End bp | 200879 |
|---|
| Gene Length | 5058 bp |
|---|
| Protein Length | 1685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153585 |
|---|
| Product | ATPase domain-containing protein |
|---|
| Protein accession | YP_777624 |
|---|
| Protein GI | 115360487 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC TTTCGACACG CCGCTTTATC GAATTGAGCC CCGGCCCGCC ACGGCTGCAC
CGCGCGATCG ACGACCATGC GCCGCCGGTT CTGGTCGCCG GGCGCGGCGC GGCGGCGCCG
TCCGCGGTCG CGGCGCTGCA ACGCGAATAT GTATTGCGCT CGGCACTGCA CGAACGCTGG
TCCGCCGTGC CGCAAGCCAT CGTGTCGCAC GGTGGCGGCG CCGTGCTCGT CCTGGCCGAT
CCGGGCGGGA TGCCGCTCTC CGTTGAAGCT GTCCCGCAGC AGCGGTTGTC TGCGTTTCTG
CGGCGCGCGA TTGCGCTCGC GACTGCGCTG GGCGAGATGC ATGCGGCCGG TATCGTGCAT
CGTGCGCTTG CGCCGCATCG CTTCCTCGTG GATGACGACG ATCGTGCGTT CCTGACGGGC
TTCGGCTATG CGCTGGGCCC CCATGCGACC GACCCGTTGC GCGACATCGC TCTCGAGTGG
GACGACACGG ATTTCGTCTA TACGGCGCCC GAGCTCGGCA CGCGCATGAA CCTGCGTGTC
GACGCGCGCG CCGATCTTTA TTCGCTCGGC TGCATTCTCT ACGAGCAGTT GACCGGCGTG
CCGCCGTTCG ATGCGACCGA TGCGGCCGGG CTCGTGCACG CGCACGCCAC GCATTCGGCG
CGCGCCCCTC ACGAACTCTT TGCGCACGTA CCCGAGCAGA TTTCGCGGAT CGTCGTGAAG
TTGCTCGAAA AGGCGCCGGA GCAGCGTTAC CGCACAGCGG CGGGGCTCGT CGCCGACCTG
CAGCGATGCG AGCAGTGCCT GCGCCGCGAC GGTCGCATTC CGATGTTCGC GCTCGATGTG
CATGCGGCGC TGCAGCGTCT GCAGCAAGCC GATCACGTGG TGGGCCGCGA ACAGGAGATC
GACGCGTTGC GCGCGCAGTA CCGTGCCGTC GCCGCCGGTG GCGAGATGCG CGTCGCATGG
GTTTCCGGCT ACTCGGGCAT CGGCAAGTCG ACGCTGCTGC TGGAGGCCGT CGCGCGCATC
AGGCACGACG GCGCGCTGCT CGTGGCCACC AGCAAGGGCG AGGAAGGGCG CCGCGGCACG
CCGTATGCGA TGCTTGCCGA GGCGCTGGCG CCGCTGCTGC AGTTCGTGTT GGGTTGCGCG
GACGACGAAT TCGACAGGTG GCGCGCGCGA ATCGGAACGG CCGTCGCGCC CGTCGGACGC
ACGCTCGCGA GATTCCTGCC GGCGCTCTCG GCGGTGCTGG GCCCGCAAGC GGGGCCGCCC
GAGCAATCCG AACTGGCGCC CGGGCTGGAG CGGGAACGCG TGCTGCAAGC GATCGCCCGG
TTGATCGCGT GTTTCGCGGC GCCGGAGCGC CCGCTCGCGC TGCTGCTCGA CGATCTGCAA
TGGGCCGATG CGGGCACGAT CCAGGTGCTT GAGCGGCTGG TGCAGCAACA CCGCGACACG
GCGTTGCTGC TCGTCGGCGC CTATCGCGGC AACGAGATCG ATGCCGGTCA CCCGTTGCGG
GCCGGCCCGC TGGCCGACGT TGCCGATGCA TTGACGGTGG AGCTCGGGCC GCTGAACGAG
CGCGCGACGA CCGAGCTGAT CGCCCATGCG CTGCATCAGG ACACCGATGC GCTGCGGCCG
TTGTCTGACC TGATCGGGCA GAGAACCGGC CGCAATCCAT TCTTCGTGCA TCATCTGCTG
CGCCTGCTGG CCGACGAAGG CATGCTCGAT TACGACGCGG GCGCGGGCCT GTGGCGCTGG
AACATGGCAC GCATCGCCGC GCATCGCGGC GGCGATGACG TCGCGATGAT GCTGGCGCGG
CAGTTCGAGC TGCTGCCGGA CGGCGCACGA TTCATGTTGC GACTGCTGGC CTGCATCGGC
CAGCGCGCGT CGACGCGCCT GCTGGCCACG GCCGCCGGCC TGAGCGAGCC CGATGCGATC
GACGGGCTGC AGGCAGCGCT CGATGCCGGC AGTGTCCAGC GCGACGGCGA CGACTGGACG
TTCTGGCACG ATCGCATTCG CGAGGCCGCG TATGCGTCGA TTCCGGAGGA CGAGCGCGCA
CCGCTGCATC ACGCGATCGC GTGCCGTTTG CTGGCGGCCG GCGAGGCCTG CGCCGACGCG
TTCGTGCTGG CCGCGCAGGC GAACCTCGCC GGCTCGGTGG TCGCGACACC CGCGCAGCGC
CGCGCGTTCG CGCGCGTGAA CCTGGAGGCC GGACGGCAAG CCCGGGCGTC CACCGCGCAT
CATTCCGCGC TCGGCTTCTT TCGCGCGGCC GTCGATTTCC TCGGCGAACG GGACACCAGC
GACGACGGGC TCGACGCGCG CATGCTGTGC GGCGAGGCCG AGTTCATGAC CGGTGCGCTC
GAAGCGGCCG AAGCACGCCT GGCCGAGCTG GAGCGGGTAG CCGGCGACGG CACGTTCGGC
GCGGATCTCA CGCGCCTGCG CGCGGCGTTG TACACGGCGC TGGGCCGCTT CGATCTGGCG
CTCGGGGTCG GCCTTGCGTT CCTGAAGCGC GCCGGCATCG ATATCCCGCC CCATCCGGAC
AGCGCGGACG TGCATCGCGA ATACCTGCGC CTGCGCGGCT GGCTGGATCG CAACGGGATC
GACGCGCTGC GCGACCTGCC GATCATCGCC GATCCGCTGC AGCGCGCGAT CGTCGACATC
TTTGCCGACC TGATCCCGCC GGCACTCTAT TCCGACCAGG ATCTGGTCGA CATGATTCTG
CTGCGCGCGG TGAATCTGGC GATCGAGCAT GGCCATTCCG ATGCATCGGC CGACGTCTAC
GTCTGCATGA ACCAGATCTT CGGCGTACGT TACGGCGATT ACGCCGCGTC GCTGGCATTC
GGCGAGCTCG CGCTGCATCT GGTCGACGAG CGCGGGCTCG ATCGGTATCG CGGCCGCGTC
TACATGGCGC ACGGCACGAT CGTGGTGCCG TGGGTGTTGC CGGCGCGCTC GGCCCGCGCG
TATATCTCGC GGGCATTCGA GATCACGGTT GAGTGCTGCG ATCATACGTT CGCGCTCTAT
TGCAAGCGCA ACGAGGCGAC CGGCATGCTG TTCGCCGGCG AATTTCTCGG CGACGTGCGC
GATACGGTGA CGCACGGGCT CGCGATCGCG CGCGATGCGA ATTTCCAGCT CGTGATCGAT
GCGCTGCTCG CGCAGCAGAT GCTGCTGAAG CAATTACAGG AAGGCGAGAG CGACGATCGC
GACCGGTTGG CGCCGCCGGA GGGCCGGCCG CCGACCCTGG TCGATCTCGC GTATTGGGTC
TACCGGCTGC AGGCCGCACT GTTGTTCGGC GATCTTCCGG ACGCGCTCGA CGCGCGTCGG
CACGCGGAAG CTTGCGAGCA TGCGGCGCGT TCGTTTTCCG AGCGGGCCGA TCTGCCGTTC
TACGGCGCGC TCGCGCTGCT TGCGCTGCCC TGCCGCGATG CGTCCGACGA GGCTGCGCTG
CAGCGCCATG TCGAGCAGCT CGACGTCTGG GCGCGCGCAT GCCCGGAGAA CTTCGTCGCG
CGACGCGAGC TGGTGCGCGC CGAGCACGCG CGCGTGAACG GGCAGCCGCT GGACGCCGCG
GAAGCCTATG CGCGCGCCGT GGTGCACGCG GGCAGGCATG GCTTTACGCA GGTCGAGGCG
CTGGCCGCCG AGTATGCGGC GCGCTTCCAT GCCGGTCGCG ACACGATTGC CGCGCACGCG
TATTTGCGCC ACGCGCTGAG CGCGTGGCAG CGTTGGGGGG CGCTCGCGAA GGTGCGCGAG
TTGCAGGCCG CGCATCCCGA TGTATTCGAT GCCGGAGCCG CCAATCCGGT CGGGAGCCGG
ATGCACGCAC TGGACGTGAA CGCGGTGCTG CGCGTGTCGA ACGCGCTGGC GAGCGACATC
GTGCCGGCGC GTCTCGTGGA AACGCTGTTG CGCACGACGC TCGAAAGCGC CGGCGCCGAG
CATGGCGCGC TCGCGGTGCT GCGCGAGGGC GTCTGGCACG TACCGGCGCG CGCGGACGTG
ATCGACGGCA CGATCGTCGT GACGCAGGAG GCCGTGTCGT TGACGGCGAA CGTGCTGCCC
GTCTCGGTCC TGCAGGCGGT CGCCCGGACG CAGGAAGGGG TAGTGATCGA CGATGCGTCG
GAGTCGCCGG TTCACGGTCA GGATGCCTAC GTTCGCCGTC GGCGCCCGCG TTCGGTGATG
TGCGTGCCGC TGATGCGTTA TGCAACGCTC GTCGGCGTGC TGTATATGGA AAACAATCTG
GCGGCGCGGA TGTTTACCGC GGCCAAGGCG GCGCTGGTGG AGGTGATCGC GTCGCAGGCC
GCTTTCGCGC TCGAGAACGC GCGGCTCTAC GAGGAGCTGC TCGAGCAGAA CCGTCAGCGC
GCGCATGCCG AGGAGCAATT GCGTGCCGCA CTGGCCGGCC TCGAGCGCGC CAGCCGGCTG
ACCGCGATGG GCGAGCTCGT CGCGTCGATC GTCCACGAGA TCGGCCAGCC GATCGCCGCG
GTCGACACGT CGGCAAGCGC CGGCTTGCGC TGGCTGAACC GGGAACCGCC CGACCTCGGC
GAGGCGCGGG CAATGCTCGA GCACATCAAC CGGAGCGCGG CGCGGGCCAA GAGCATCATC
CAGGCGCTGC GCGCGAAGGC CCGCAAGGCC GCGCCGCAGT TTGCGACGGT CGACCTCGCC
GAGGCCGTGC GCGAGGCCGC GGCGCTCGTC GCGCGGCAGC TCGACACGCT GGACGTGGTG
CTGGAGCTGC GCAGTCACGA GGGCCCCGTC TACGTATACG GCGACCGGAT CCAGCTCCAG
CAGGTCGTGA TCAACCTGCT GACGAACGGC GCCGAATCGA TGGCCGAGCT CGAGACGGCG
CGTCGTCTTT CGCTTGCGTG CGAAGCGCAC GGCGTTGACA GTGTGTGCGT GAGCGTGGAG
GATTCGGGCA GCGGCATTGC GCCCGATATC GCGGACCGGC TGCTCGAACC GCTTTTCACG
ACCAAGGAGA ACGGGATGGG CATGGGCCTC GCCATTTCGC ATTCGATCGT GGACGCGCAC
GGCGGCACGT TGACGCTGTC GCCGCGAGAA GGTGCCGGTA CGCGCGCCAC CGTGATGCTG
CCGCGCGTCG ATCCATGA
|
|---|
| Protein sequence | MIELSTRRFI ELSPGPPRLH RAIDDHAPPV LVAGRGAAAP SAVAALQREY VLRSALHERW
SAVPQAIVSH GGGAVLVLAD PGGMPLSVEA VPQQRLSAFL RRAIALATAL GEMHAAGIVH
RALAPHRFLV DDDDRAFLTG FGYALGPHAT DPLRDIALEW DDTDFVYTAP ELGTRMNLRV
DARADLYSLG CILYEQLTGV PPFDATDAAG LVHAHATHSA RAPHELFAHV PEQISRIVVK
LLEKAPEQRY RTAAGLVADL QRCEQCLRRD GRIPMFALDV HAALQRLQQA DHVVGREQEI
DALRAQYRAV AAGGEMRVAW VSGYSGIGKS TLLLEAVARI RHDGALLVAT SKGEEGRRGT
PYAMLAEALA PLLQFVLGCA DDEFDRWRAR IGTAVAPVGR TLARFLPALS AVLGPQAGPP
EQSELAPGLE RERVLQAIAR LIACFAAPER PLALLLDDLQ WADAGTIQVL ERLVQQHRDT
ALLLVGAYRG NEIDAGHPLR AGPLADVADA LTVELGPLNE RATTELIAHA LHQDTDALRP
LSDLIGQRTG RNPFFVHHLL RLLADEGMLD YDAGAGLWRW NMARIAAHRG GDDVAMMLAR
QFELLPDGAR FMLRLLACIG QRASTRLLAT AAGLSEPDAI DGLQAALDAG SVQRDGDDWT
FWHDRIREAA YASIPEDERA PLHHAIACRL LAAGEACADA FVLAAQANLA GSVVATPAQR
RAFARVNLEA GRQARASTAH HSALGFFRAA VDFLGERDTS DDGLDARMLC GEAEFMTGAL
EAAEARLAEL ERVAGDGTFG ADLTRLRAAL YTALGRFDLA LGVGLAFLKR AGIDIPPHPD
SADVHREYLR LRGWLDRNGI DALRDLPIIA DPLQRAIVDI FADLIPPALY SDQDLVDMIL
LRAVNLAIEH GHSDASADVY VCMNQIFGVR YGDYAASLAF GELALHLVDE RGLDRYRGRV
YMAHGTIVVP WVLPARSARA YISRAFEITV ECCDHTFALY CKRNEATGML FAGEFLGDVR
DTVTHGLAIA RDANFQLVID ALLAQQMLLK QLQEGESDDR DRLAPPEGRP PTLVDLAYWV
YRLQAALLFG DLPDALDARR HAEACEHAAR SFSERADLPF YGALALLALP CRDASDEAAL
QRHVEQLDVW ARACPENFVA RRELVRAEHA RVNGQPLDAA EAYARAVVHA GRHGFTQVEA
LAAEYAARFH AGRDTIAAHA YLRHALSAWQ RWGALAKVRE LQAAHPDVFD AGAANPVGSR
MHALDVNAVL RVSNALASDI VPARLVETLL RTTLESAGAE HGALAVLREG VWHVPARADV
IDGTIVVTQE AVSLTANVLP VSVLQAVART QEGVVIDDAS ESPVHGQDAY VRRRRPRSVM
CVPLMRYATL VGVLYMENNL AARMFTAAKA ALVEVIASQA AFALENARLY EELLEQNRQR
AHAEEQLRAA LAGLERASRL TAMGELVASI VHEIGQPIAA VDTSASAGLR WLNREPPDLG
EARAMLEHIN RSAARAKSII QALRAKARKA APQFATVDLA EAVREAAALV ARQLDTLDVV
LELRSHEGPV YVYGDRIQLQ QVVINLLTNG AESMAELETA RRLSLACEAH GVDSVCVSVE
DSGSGIAPDI ADRLLEPLFT TKENGMGMGL AISHSIVDAH GGTLTLSPRE GAGTRATVML
PRVDP
|
|---|
| |