Gene Bamb_5643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5643 
Symbol 
ID4314510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand+ 
Start bp76797 
End bp77504 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content71% 
IMG OID638153485 
Producthypothetical protein 
Protein accessionYP_777524 
Protein GI115360387 
COG category[S] Function unknown 
COG ID[COG2120] Uncharacterized proteins, LmbE homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.184267 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.153331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCTC CGACACGCTG GCTCGTCATC TCGCCGCATC TCGACGATGC CGTCTTCAGT 
TGCGGGCAGT TGCTCGCGCA GGCGCCGGGC TCGGTAGTCG TCACGGTCTT CGCCGGGATT 
CCCGCGCGCG GATCGGACGC GCCGCCGTGG GATCGCCGGG CCGGCTTTCG CACCGCCGAC 
GAAGCGGTGC GCAGCCGCCG CGACGAAGAC CGCCGTGCGC TCGCGATGCT GGGCGCGCAG 
CCGGTATGGC TCGACTTCCT CGACGATCAG TACGGCACGC GGGCCGCATC GACGGCGATC 
GCCGCGCGCC TCGCCGACAC GATCGACGCC CACCCGGGCT TCGGCGTGCT CGCGCCGGCC 
GGCCTGTTTC ACCGCGATCA CATCCAGGTG CAGCAGGCCG TGCTGACGCT GCTGCGCGAG 
AACAGCCGCG CGGGCGACGC GGCGCGCGTC TGGCGCTTCT ACGAGGATGT GCCGTATCGG 
CGGATCGACG GCTTGATGGC GAAGCGCGTG ATCGACTGGC GCGAGCACGG CTGGATCGGT 
CACCCGGTCG GGCCGCCAGT CGGCAACCGC ACCGACGGCG CGGCAGCGAA GGCCGCCGCC 
GTGGACGCGT ATGCGAGCCA GATTGCGCTG TTCGAGCCTC ATATGCGCGC CGATCTCCGT 
GAACCCGAAA CGTACTGGCG GCTCGAATGC GACAACGTGT CCGCGTAA
 
Protein sequence
MTAPTRWLVI SPHLDDAVFS CGQLLAQAPG SVVVTVFAGI PARGSDAPPW DRRAGFRTAD 
EAVRSRRDED RRALAMLGAQ PVWLDFLDDQ YGTRAASTAI AARLADTIDA HPGFGVLAPA 
GLFHRDHIQV QQAVLTLLRE NSRAGDAARV WRFYEDVPYR RIDGLMAKRV IDWREHGWIG 
HPVGPPVGNR TDGAAAKAAA VDAYASQIAL FEPHMRADLR EPETYWRLEC DNVSA