| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5616 |
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| Symbol | |
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| ID | 4314483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 51314 |
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| End bp | 52753 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638153458 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_777497 |
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| Protein GI | 115360360 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.502286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.202881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTCA CGCTTGCGCT CCAGATGCGA CAGCATCTGG CACTCACACC GAGGCTGCAG
CAATCGCTGC GTCTGCTGCA GCTGTCTTCG CTCGAATTCC AGCAGGAATT GCGGCAGGCG
CTCGACTCGA ATCCGTTTCT CGAAGATGGC CAGGGTGACG ACGAAGCCGT CGCCGAGACC
GACGCGCCAG ACCATCCGGC AGAAGCCGCA GCGCCCGAGC CCGTGCCCGA TGGCGATGAC
GTGCGGCCGC CGGACGGCGA CGTGTCGTAC ACGGCCGCGC CGGCGCCGCG CACCACGGGC
CGGCAGGGCG ACGACGTCAG CGACCTGTCG CCCGGCGAAT GGATGGCCGC CGAGCCGTCG
CTGCACCAGC AACTGCACGA CGCGCTGCGT CTCTATCCGC TGAACCGGCG CGATCGCGAG
GCCGCGCGCA TCGTGATCGA CGCGCTCGAC GAGGACGGCT ACCTGCGTCA GGAGCTGTCC
GAGCTGCTGG TCGCGGCCGA TCCCGCGCTG CTGCTGTCGG AACAGGATCT CGGGGTTGCG
TTGCGGCTCG TGCAGATGCT CGACCGCCCG GGGATCGCAG CACGCTCGCT GTCCGAATGC
CTGCTGCTGC AGCTCGACGC GATTCCCGCC GGCACGCCGG CGCTCGCGGA AGCGAAGGTG
ATCGCGCGCG AACATCTCGA ACGGCTCGCG CGGCGCGAGA CCGCCGAGAT TCAGCGGCGC
GTCGGCTGCA GCCAGGCGAC GATGCAGGCC GCGTGCTTAC TGGTGCGCGG GCTCGATCCG
CGCCCCGGCA ATCACTACGG CAGCACGCGC GGCGACTATG TGGTGCCCGA CGTGATCGTG
CGCCAGGTGC GCGACGAATG GATCGTGACG ATCAACCCGG CCGTGCTGCC GCGCGCGCGG
CTGCATGAAC GCTATGCGAC GCTGTTCGCG CAGTCGAGCG GCGAGCGCGA TTCGCCGCTC
GGCCAGCAAT TGCAGGAAGC GCGCTGGCTG ATCCGCAACG TGCAGAAGCG CTTCGACACG
ATCCAGCGCG TCGGCGAATG CATCGTCGCG CGGCAGCGTG ACTTCTTCCG CTACGGCGAG
ATCGCGATGA AGCCGCTCGT GCTGCGCGAC ATAGCGGAAG AGCTCGATCT GCACGAATCG
ACGGTGTCGC GTGCGACGGG CAACAAGTAC ATGGCCACGC CGCACGGCAC GTTCGAGTTC
AAGCACTTCT TCCCGCGCAA ACTGGAAGCG GCCGGCAAGG GCGTGTGCTC GGCGTCGGCC
GCGAAGGTGC TGATCCGCGA CATGATCGCG GCCGAGCGCC ATACCGACCC GCTGTCCGAT
GTCGCGCTCG CGCAGAACCT CGCGGGGCGC GGCATCCTTC TTGCTCGTCG TACGGTGACC
AAGTATCGCC AGGCCATGAA GATCCCGCCG GCCGAATTGC GTCGGCGCGA CGCCGCCTGA
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| Protein sequence | MSVTLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDSNPFLEDG QGDDEAVAET
DAPDHPAEAA APEPVPDGDD VRPPDGDVSY TAAPAPRTTG RQGDDVSDLS PGEWMAAEPS
LHQQLHDALR LYPLNRRDRE AARIVIDALD EDGYLRQELS ELLVAADPAL LLSEQDLGVA
LRLVQMLDRP GIAARSLSEC LLLQLDAIPA GTPALAEAKV IAREHLERLA RRETAEIQRR
VGCSQATMQA ACLLVRGLDP RPGNHYGSTR GDYVVPDVIV RQVRDEWIVT INPAVLPRAR
LHERYATLFA QSSGERDSPL GQQLQEARWL IRNVQKRFDT IQRVGECIVA RQRDFFRYGE
IAMKPLVLRD IAEELDLHES TVSRATGNKY MATPHGTFEF KHFFPRKLEA AGKGVCSASA
AKVLIRDMIA AERHTDPLSD VALAQNLAGR GILLARRTVT KYRQAMKIPP AELRRRDAA
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