Gene Bamb_5611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5611 
Symbol 
ID4314606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp47129 
End bp48136 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content67% 
IMG OID638153453 
ProductKu domain-containing protein 
Protein accessionYP_777492 
Protein GI115360355 
COG category[S] Function unknown 
COG ID[COG1273] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02772] Ku protein, prokaryotic 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.542393 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACCGC GGATGATATG GAAAGGCGCG ATCAGTTTCG GGCTCGTTCA CGTGCCCGTG 
CAGCTGTTCC CGGCGACACG CACCGTGAAG CCGTCGTTCC GGCTGCTCGA CAAGCGCTCG
ATGGATCCGG TCGGCTATCG GCAGATCAAC AAGCGCACCG GCAAGGAGGT CACGCGCGAG
GACATCGTGC GCGGCTACGA GTACGAGAAG GAGCGCTACG TTGTACTGAC CGATGAAGAG
ATTCGCGCGG CGAACCCCGA ATCGACGCAG ACGGTCGACA TTCTCACGTT CGTCGACGCG
GACGCGGTGT CGTTCCTGTA TCTCGACACG CCGTACTACC TCGTGCCGGA CCGCAAGGGC
GAGAAGGTCT ATGCGCTGCT GCGCGAGGCA CTGAAGGACA GCGGCAAGAT CGGCATCGCG
CTCGTCGTGA TGCGCGACCG CCAGCATCTC GGCGCGCTGA TTCCGGTCGG GCCGCTGCTC
GCGCTCGACA CGTTGCGCTG GCAGGAGGAA CTGCGCCCGC TCGACGAACT GTCGGTGCCG
ACGGACGACG CAAAGCACGC GGGCGTGACC GCGCGCGAGC TGACGATGGC GAAGAAGCTG
ATCGACGACA TGGCGGGCAA GTGGACGCCC GACGAGTATC ACGACACGTT CCGCGACGAC
ATCCTCGAAC TGGTCGAGCG CAAGGTGCGC TCGGGCAAGA TCGAGGAAAT CGAGGACCGG
CCGGCGCAGA CGGGCCGTGC CGCGACCAAC GTGGTCGACC TCACCGAGCT GCTCAAGCGC
AGCCTGAAGG GCGGCGGTGG CGCGCGCGCA TCGGACCTGC GCGACGAACG CGCGGAAGAG
GAGGCCGAGA CGTCGTCGCC TGCCGGCGCG CGTCGCAAGG CGGCTGCGAA ATCCGCGTCG
AAAGGCGCGG CCGTGAAGAG TCCGGCGAAG CGGCCGGCCG CGAAACGCGC GGCGACGGGC
GCACATGCGG CGAAGAAAAC CGCCGTGCGC GGCAAGCACG CCGCATGA
 
Protein sequence
MAPRMIWKGA ISFGLVHVPV QLFPATRTVK PSFRLLDKRS MDPVGYRQIN KRTGKEVTRE 
DIVRGYEYEK ERYVVLTDEE IRAANPESTQ TVDILTFVDA DAVSFLYLDT PYYLVPDRKG
EKVYALLREA LKDSGKIGIA LVVMRDRQHL GALIPVGPLL ALDTLRWQEE LRPLDELSVP
TDDAKHAGVT ARELTMAKKL IDDMAGKWTP DEYHDTFRDD ILELVERKVR SGKIEEIEDR
PAQTGRAATN VVDLTELLKR SLKGGGGARA SDLRDERAEE EAETSSPAGA RRKAAAKSAS
KGAAVKSPAK RPAAKRAATG AHAAKKTAVR GKHAA