Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5591 |
Symbol | |
ID | 4314528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 20229 |
End bp | 23642 |
Gene Length | 3414 bp |
Protein Length | 1137 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638153433 |
Product | trehalose synthase |
Protein accession | YP_777472 |
Protein GI | 115360335 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00664495 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAC GCGAAGATCC CCTCGACGAC GTGCGTCGCG CGCAATTCCC GTCCCTCGCA CCGGCCGGCA CGCCGCGCCG GCGCCGTTCA CGGCGCCGCG CGCCCGCGCT CTGCGCGGAC GATCCGCTGT GGTACAAGGA CGCGATCATC TACCAGGTAC ACGTGAAGTC GTTCTACGAC TCGAACAACG ACGGGATCGG CGACTTCCCG GGCCTGATCA TGAAGCTCGA CTACATCGCC GAGCTCGGCG TCGACACGAT CTGGCTGCTG CCGTTCTATC CGTCGCCGCG CCGCGACGAC GGCTACGACA TCGCCGACTA CCGCGACGTG CATCCCGACT ACGGCACGCT CGCCGACGTG CGGCGCTTCA TTCGCGAAGC GCACGCGCGC GGCATCCGCG TGATCACCGA GCTGGTGATC AACCACACGT CGGACCAGCA TCCGTGGTTC CAGCGCGCGC GGCGCGCGAA GCCCGGCTCG ATGCATCGCG ACTACTACGT GTGGTCCGAC ACCGACACGA AATACGCGGG CACGCGGATC ATCTTTCTGG ATACCGAAAC ATCGAACTGG ACGCACGACC CGATCGCCGG CCAGTACTAC TGGCACCGCT TCTACTCGCA CCAGCCGGAC CTGAACTTCG ACAACCCGGC CGTCGTGCGC GAGGTGATCC AGGTGATGCG CTTCTGGCTC GATCTCGGCA TCGACGGGCT GCGGCTCGAC GCGGTGCCGT ACCTGGTCGA GCGCGAAGGC ACCAACAACG AGAACCTGCC GGAAACGCAT GCGATCCTGA AGCGGATCCG CGCGACGATC GACGCCGAGT ATCCGAACCG GATGCTGCTC GCGGAAGCGA ACCAGTGGCC GGAGGACGTG CAGGAATACT TCGGCGAGGA GAACGAATGC CACATGGCGT TCCACTTTCC GCTGATGCCG CGCATCTACA TGTCGATCGC GAGCGAGGAC CGCTTCCCGA TCATCGACAT CATGCGGCAG ACGCCGGCGC TCGCGCCAAG CAATCAGTGG GCCGTGTTCC TGCGCAATCA CGACGAGCTG ACGCTCGAGA TGGTGACCGA CTCGGAGCGC GACCTGCTGT GGCAGACCTA CGCGAGCGAT CGCCGCGCGC GGATCAACCT CGGGATCCGG CGCCGCCTCG CGCCGCTGAT GGAACGCGAC CGGCGCCGCA TCGAGCTGAT CAACTCGCTT CTGCTGTCGA TGCCCGGCAC GCCGGTGATC TACTACGGCG ACGAACTCGG CATGGGCGAC AACATCCACC TCGGCGACCG CGACGGCGTG CGCACGCCGA TGCAATGGTC GTCCGACCGC AACGGCGGTT TCTCGCGCGC GGACCCGGAA CTGCTGGTGC TGCCGCCCGT GATGGGCGCG CTGTACGGCT ATGACGCGGT CAACGTCGAG GCGCAGACGC GCGACCCGCA TTCGCTGCTG AACTGGACCC GCCGGATCCT GTCGACGCGC CGCGCGACGC AGTCGTTCGG CCGCGGCACG ATCCGCTTCC TGCGTCCGGA CAACCGCAAG GTGCTCGCGT ATCTGCGCGA ACTCGAAGGC CACGAGACAG TGCTGTGCGT CGCGAACCTG TCGCGCGCGT CGCAGGCGGT CGAGCTCGAC CTGTCCGAAT TCGCGGGCCG CGTGCCGATC GAGATGACGT CGGACTCGGC GTTTCCGCCG ATCGGGCAGC TCACGTACCT GCTGACCTTT CCGCCGTACG GGTTCCTGTG GTTCGTGCTA TCCGAGCACG GCCGCGAGCC GTCGTGGCGA CAGCCGCACG CGGAGCCGCT GCCCGAATAC GTGACGATCG TGATGCGGCG CGGCGACGCG CGACCCGACG TCGGGCAACT GCACACGCTC GCGCACGATG CGCTCGCGTC GTGGCTCACG CGGCGGCGCT GGTTTGCATC GAAGGACCGC AAGATCGGCG ACGCATGGCT GAACGTCGTC ACGCCGATGC CGGACGAACC GTTCCAGTAC GCGGAGGCTT GGGTGTCCGC GAGCGACGGC GGCGTCGAGC GCTATGTCGT GCCGCTTGCC ACCGCGTGGG GCGGCGAGAC CTCGCATCCG CTGTTCACGC AGCTCGCGCT CGCCCGCGTG CGGCGCGGCC ATACGGTCGG CTACCTGACC GACGCGTTCG CGCTGCCGGC ATTCGCGCGC GGGATGCTGC GCAAGCTGCG CGACGGCGCG ACGGTGCCGA CGTCCGACGG CGGCCGGCTC GACTTCCTGC CCGAGCACGC GCTGGCCGGC CTCGATCCCG GCGATGAGGC CGAAGTGCGC TGGCTCGCGG CCGAGCAGAG CAACAGCTCG CTCGTGATCG GCGACGCGAT CGTGCTGAAG CTGGTGCGCA AGGTCGCGCA CGGCGTTCAT CCGGAAGCGG AGATGAGCCG GCACCTGACG CGAATCGGCT ATGCGAACAC CGCGACGCTC GCGGGCGAAG TCGTGCACGT CGATCCGGAC GGCACGCCGC ATACGGTCGC GATCCTGCAG CGCTACGTCG ACAACCAGGG CGACGCGTGG ACGCGTTCGT TCGACTTCCT GCGGCGCGCG ATCGACGAGC TCGCGCTGCC GGCCGCGGGC GACGGCGACG CGGCCGAAGT CGACGACGAA CCCGATGCGC TGCTCGGCTA CGCGGCGTTC GCAGGCATCA TCGGCACGCG GCTCGGCCAG TTGCACGTCG CGCTCGCGCA ACCGTCCGAC GATCCCGCGT TCGCGCCCGA AGCCGCGACG CCCGAGCACG TCGACGGCTG GTGCGTGGAT GCGATCGCGT CGTTCGAGCG CGCGCTCGAC GTGCTGCGCA CGCAGCTCGA CAAGCTCGAT CCGGTCAACC GCGCGGCGGC GGACACGCTG CTCGCGTCGC GCGACGCGGC CGTGCAGGCC ATCGGCGAAC TCGTGCCGCG CACGCTCGAT GCGCAATGCA CGCGCGTTCA CGGCGATTTC CATCTCGGCC AGGTGCTCGA CGTGCAAGGC GACGCGCTGC TGATCGACTT CGAAGGCGAG CCGGCGCGCG CGCTCGACCG GCGCCGCGCG AAATCGCATC CGCTGCGCGA CGTGGCCGGC CTGCTGCGTT CGCTGTCGTA CGTGAGCGCC ACCGCGCAGT TCGCGATCGA GAAGGCGCCG CCGCAGACGG CCGGCCGCAA GCGCGCGCTG TTCGACCGCT TCGGACAGGC CGCCGCCGAC CGCTTCGTCG AATGCTATCG CGCGGCCGCC GATCAGGCGC CCGAGCGCTT CGTCGACCCG CGTTACGCGG ACCGCCTGCT CGCGCTGTTC CTGATCGACA AGGCGTCGTA CGAGCTGTGC TACGAAGCCG CGAACCGCCC GGACTGGCTC GGCGTGCCGG TCGGCGGACT CGCCGCGCTG ATCGAACGCC TGCTCGCGAC CGACCGCGCG CCCGACCACG GAGGCAACCG ATGA
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Protein sequence | MMKREDPLDD VRRAQFPSLA PAGTPRRRRS RRRAPALCAD DPLWYKDAII YQVHVKSFYD SNNDGIGDFP GLIMKLDYIA ELGVDTIWLL PFYPSPRRDD GYDIADYRDV HPDYGTLADV RRFIREAHAR GIRVITELVI NHTSDQHPWF QRARRAKPGS MHRDYYVWSD TDTKYAGTRI IFLDTETSNW THDPIAGQYY WHRFYSHQPD LNFDNPAVVR EVIQVMRFWL DLGIDGLRLD AVPYLVEREG TNNENLPETH AILKRIRATI DAEYPNRMLL AEANQWPEDV QEYFGEENEC HMAFHFPLMP RIYMSIASED RFPIIDIMRQ TPALAPSNQW AVFLRNHDEL TLEMVTDSER DLLWQTYASD RRARINLGIR RRLAPLMERD RRRIELINSL LLSMPGTPVI YYGDELGMGD NIHLGDRDGV RTPMQWSSDR NGGFSRADPE LLVLPPVMGA LYGYDAVNVE AQTRDPHSLL NWTRRILSTR RATQSFGRGT IRFLRPDNRK VLAYLRELEG HETVLCVANL SRASQAVELD LSEFAGRVPI EMTSDSAFPP IGQLTYLLTF PPYGFLWFVL SEHGREPSWR QPHAEPLPEY VTIVMRRGDA RPDVGQLHTL AHDALASWLT RRRWFASKDR KIGDAWLNVV TPMPDEPFQY AEAWVSASDG GVERYVVPLA TAWGGETSHP LFTQLALARV RRGHTVGYLT DAFALPAFAR GMLRKLRDGA TVPTSDGGRL DFLPEHALAG LDPGDEAEVR WLAAEQSNSS LVIGDAIVLK LVRKVAHGVH PEAEMSRHLT RIGYANTATL AGEVVHVDPD GTPHTVAILQ RYVDNQGDAW TRSFDFLRRA IDELALPAAG DGDAAEVDDE PDALLGYAAF AGIIGTRLGQ LHVALAQPSD DPAFAPEAAT PEHVDGWCVD AIASFERALD VLRTQLDKLD PVNRAAADTL LASRDAAVQA IGELVPRTLD AQCTRVHGDF HLGQVLDVQG DALLIDFEGE PARALDRRRA KSHPLRDVAG LLRSLSYVSA TAQFAIEKAP PQTAGRKRAL FDRFGQAAAD RFVECYRAAA DQAPERFVDP RYADRLLALF LIDKASYELC YEAANRPDWL GVPVGGLAAL IERLLATDRA PDHGGNR
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