Gene Bamb_5591 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5591 
Symbol 
ID4314528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp20229 
End bp23642 
Gene Length3414 bp 
Protein Length1137 aa 
Translation table11 
GC content69% 
IMG OID638153433 
Producttrehalose synthase 
Protein accessionYP_777472 
Protein GI115360335 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis 
TIGRFAM ID[TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00664495 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAC GCGAAGATCC CCTCGACGAC GTGCGTCGCG CGCAATTCCC GTCCCTCGCA 
CCGGCCGGCA CGCCGCGCCG GCGCCGTTCA CGGCGCCGCG CGCCCGCGCT CTGCGCGGAC
GATCCGCTGT GGTACAAGGA CGCGATCATC TACCAGGTAC ACGTGAAGTC GTTCTACGAC
TCGAACAACG ACGGGATCGG CGACTTCCCG GGCCTGATCA TGAAGCTCGA CTACATCGCC
GAGCTCGGCG TCGACACGAT CTGGCTGCTG CCGTTCTATC CGTCGCCGCG CCGCGACGAC
GGCTACGACA TCGCCGACTA CCGCGACGTG CATCCCGACT ACGGCACGCT CGCCGACGTG
CGGCGCTTCA TTCGCGAAGC GCACGCGCGC GGCATCCGCG TGATCACCGA GCTGGTGATC
AACCACACGT CGGACCAGCA TCCGTGGTTC CAGCGCGCGC GGCGCGCGAA GCCCGGCTCG
ATGCATCGCG ACTACTACGT GTGGTCCGAC ACCGACACGA AATACGCGGG CACGCGGATC
ATCTTTCTGG ATACCGAAAC ATCGAACTGG ACGCACGACC CGATCGCCGG CCAGTACTAC
TGGCACCGCT TCTACTCGCA CCAGCCGGAC CTGAACTTCG ACAACCCGGC CGTCGTGCGC
GAGGTGATCC AGGTGATGCG CTTCTGGCTC GATCTCGGCA TCGACGGGCT GCGGCTCGAC
GCGGTGCCGT ACCTGGTCGA GCGCGAAGGC ACCAACAACG AGAACCTGCC GGAAACGCAT
GCGATCCTGA AGCGGATCCG CGCGACGATC GACGCCGAGT ATCCGAACCG GATGCTGCTC
GCGGAAGCGA ACCAGTGGCC GGAGGACGTG CAGGAATACT TCGGCGAGGA GAACGAATGC
CACATGGCGT TCCACTTTCC GCTGATGCCG CGCATCTACA TGTCGATCGC GAGCGAGGAC
CGCTTCCCGA TCATCGACAT CATGCGGCAG ACGCCGGCGC TCGCGCCAAG CAATCAGTGG
GCCGTGTTCC TGCGCAATCA CGACGAGCTG ACGCTCGAGA TGGTGACCGA CTCGGAGCGC
GACCTGCTGT GGCAGACCTA CGCGAGCGAT CGCCGCGCGC GGATCAACCT CGGGATCCGG
CGCCGCCTCG CGCCGCTGAT GGAACGCGAC CGGCGCCGCA TCGAGCTGAT CAACTCGCTT
CTGCTGTCGA TGCCCGGCAC GCCGGTGATC TACTACGGCG ACGAACTCGG CATGGGCGAC
AACATCCACC TCGGCGACCG CGACGGCGTG CGCACGCCGA TGCAATGGTC GTCCGACCGC
AACGGCGGTT TCTCGCGCGC GGACCCGGAA CTGCTGGTGC TGCCGCCCGT GATGGGCGCG
CTGTACGGCT ATGACGCGGT CAACGTCGAG GCGCAGACGC GCGACCCGCA TTCGCTGCTG
AACTGGACCC GCCGGATCCT GTCGACGCGC CGCGCGACGC AGTCGTTCGG CCGCGGCACG
ATCCGCTTCC TGCGTCCGGA CAACCGCAAG GTGCTCGCGT ATCTGCGCGA ACTCGAAGGC
CACGAGACAG TGCTGTGCGT CGCGAACCTG TCGCGCGCGT CGCAGGCGGT CGAGCTCGAC
CTGTCCGAAT TCGCGGGCCG CGTGCCGATC GAGATGACGT CGGACTCGGC GTTTCCGCCG
ATCGGGCAGC TCACGTACCT GCTGACCTTT CCGCCGTACG GGTTCCTGTG GTTCGTGCTA
TCCGAGCACG GCCGCGAGCC GTCGTGGCGA CAGCCGCACG CGGAGCCGCT GCCCGAATAC
GTGACGATCG TGATGCGGCG CGGCGACGCG CGACCCGACG TCGGGCAACT GCACACGCTC
GCGCACGATG CGCTCGCGTC GTGGCTCACG CGGCGGCGCT GGTTTGCATC GAAGGACCGC
AAGATCGGCG ACGCATGGCT GAACGTCGTC ACGCCGATGC CGGACGAACC GTTCCAGTAC
GCGGAGGCTT GGGTGTCCGC GAGCGACGGC GGCGTCGAGC GCTATGTCGT GCCGCTTGCC
ACCGCGTGGG GCGGCGAGAC CTCGCATCCG CTGTTCACGC AGCTCGCGCT CGCCCGCGTG
CGGCGCGGCC ATACGGTCGG CTACCTGACC GACGCGTTCG CGCTGCCGGC ATTCGCGCGC
GGGATGCTGC GCAAGCTGCG CGACGGCGCG ACGGTGCCGA CGTCCGACGG CGGCCGGCTC
GACTTCCTGC CCGAGCACGC GCTGGCCGGC CTCGATCCCG GCGATGAGGC CGAAGTGCGC
TGGCTCGCGG CCGAGCAGAG CAACAGCTCG CTCGTGATCG GCGACGCGAT CGTGCTGAAG
CTGGTGCGCA AGGTCGCGCA CGGCGTTCAT CCGGAAGCGG AGATGAGCCG GCACCTGACG
CGAATCGGCT ATGCGAACAC CGCGACGCTC GCGGGCGAAG TCGTGCACGT CGATCCGGAC
GGCACGCCGC ATACGGTCGC GATCCTGCAG CGCTACGTCG ACAACCAGGG CGACGCGTGG
ACGCGTTCGT TCGACTTCCT GCGGCGCGCG ATCGACGAGC TCGCGCTGCC GGCCGCGGGC
GACGGCGACG CGGCCGAAGT CGACGACGAA CCCGATGCGC TGCTCGGCTA CGCGGCGTTC
GCAGGCATCA TCGGCACGCG GCTCGGCCAG TTGCACGTCG CGCTCGCGCA ACCGTCCGAC
GATCCCGCGT TCGCGCCCGA AGCCGCGACG CCCGAGCACG TCGACGGCTG GTGCGTGGAT
GCGATCGCGT CGTTCGAGCG CGCGCTCGAC GTGCTGCGCA CGCAGCTCGA CAAGCTCGAT
CCGGTCAACC GCGCGGCGGC GGACACGCTG CTCGCGTCGC GCGACGCGGC CGTGCAGGCC
ATCGGCGAAC TCGTGCCGCG CACGCTCGAT GCGCAATGCA CGCGCGTTCA CGGCGATTTC
CATCTCGGCC AGGTGCTCGA CGTGCAAGGC GACGCGCTGC TGATCGACTT CGAAGGCGAG
CCGGCGCGCG CGCTCGACCG GCGCCGCGCG AAATCGCATC CGCTGCGCGA CGTGGCCGGC
CTGCTGCGTT CGCTGTCGTA CGTGAGCGCC ACCGCGCAGT TCGCGATCGA GAAGGCGCCG
CCGCAGACGG CCGGCCGCAA GCGCGCGCTG TTCGACCGCT TCGGACAGGC CGCCGCCGAC
CGCTTCGTCG AATGCTATCG CGCGGCCGCC GATCAGGCGC CCGAGCGCTT CGTCGACCCG
CGTTACGCGG ACCGCCTGCT CGCGCTGTTC CTGATCGACA AGGCGTCGTA CGAGCTGTGC
TACGAAGCCG CGAACCGCCC GGACTGGCTC GGCGTGCCGG TCGGCGGACT CGCCGCGCTG
ATCGAACGCC TGCTCGCGAC CGACCGCGCG CCCGACCACG GAGGCAACCG ATGA
 
Protein sequence
MMKREDPLDD VRRAQFPSLA PAGTPRRRRS RRRAPALCAD DPLWYKDAII YQVHVKSFYD 
SNNDGIGDFP GLIMKLDYIA ELGVDTIWLL PFYPSPRRDD GYDIADYRDV HPDYGTLADV
RRFIREAHAR GIRVITELVI NHTSDQHPWF QRARRAKPGS MHRDYYVWSD TDTKYAGTRI
IFLDTETSNW THDPIAGQYY WHRFYSHQPD LNFDNPAVVR EVIQVMRFWL DLGIDGLRLD
AVPYLVEREG TNNENLPETH AILKRIRATI DAEYPNRMLL AEANQWPEDV QEYFGEENEC
HMAFHFPLMP RIYMSIASED RFPIIDIMRQ TPALAPSNQW AVFLRNHDEL TLEMVTDSER
DLLWQTYASD RRARINLGIR RRLAPLMERD RRRIELINSL LLSMPGTPVI YYGDELGMGD
NIHLGDRDGV RTPMQWSSDR NGGFSRADPE LLVLPPVMGA LYGYDAVNVE AQTRDPHSLL
NWTRRILSTR RATQSFGRGT IRFLRPDNRK VLAYLRELEG HETVLCVANL SRASQAVELD
LSEFAGRVPI EMTSDSAFPP IGQLTYLLTF PPYGFLWFVL SEHGREPSWR QPHAEPLPEY
VTIVMRRGDA RPDVGQLHTL AHDALASWLT RRRWFASKDR KIGDAWLNVV TPMPDEPFQY
AEAWVSASDG GVERYVVPLA TAWGGETSHP LFTQLALARV RRGHTVGYLT DAFALPAFAR
GMLRKLRDGA TVPTSDGGRL DFLPEHALAG LDPGDEAEVR WLAAEQSNSS LVIGDAIVLK
LVRKVAHGVH PEAEMSRHLT RIGYANTATL AGEVVHVDPD GTPHTVAILQ RYVDNQGDAW
TRSFDFLRRA IDELALPAAG DGDAAEVDDE PDALLGYAAF AGIIGTRLGQ LHVALAQPSD
DPAFAPEAAT PEHVDGWCVD AIASFERALD VLRTQLDKLD PVNRAAADTL LASRDAAVQA
IGELVPRTLD AQCTRVHGDF HLGQVLDVQG DALLIDFEGE PARALDRRRA KSHPLRDVAG
LLRSLSYVSA TAQFAIEKAP PQTAGRKRAL FDRFGQAAAD RFVECYRAAA DQAPERFVDP
RYADRLLALF LIDKASYELC YEAANRPDWL GVPVGGLAAL IERLLATDRA PDHGGNR