Gene Bamb_5540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5540 
Symbol 
ID4314429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2610296 
End bp2611564 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content72% 
IMG OID638153382 
ProductRNA polymerase ECF-subfamily sigma factor 
Protein accessionYP_777421 
Protein GI115360283 
COG category[K] Transcription 
COG ID[COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.76508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGCTCG AGGCGACCCA CCGTGCGATC GAGGCCGTCT GGCGAATCGA GGCGCCCAAG 
ATCATTGCCC GCGCCGCACG CGTGGTGCGC GACGTCGGCG TGGCCGAGGA ACTCGCGCAG
GACACGCTCG TCGCGGCGCT CGAGCACTGG CCCGTCGACG GCGTGCCCGA CAATCCGGCC
GCTTGGCTGA TGACGGCCGT GAAGCGGCGC GCGCTCGACC GGGTCCGGCA GGAGTCGCTG
CATGCGGCGA AGCGCGATCA GCTCGGGCAT GAAATGGACG CGCTCGAAGC GCACGTCGTG
CCCGACATCG CGGAGGCACT CGCCGACGCG AGCGACGACG ACATCGGCGA CGATCTGCTG
CGGCTGATCT TCACGTCGTG CCATCCGGTG CTGTCGACCG ATGCGCGCGT CGCGCTCACG
CTACGGCTGC TCGGCGGGCT GACCACGAGC GAGATCGCGC GTGCGTTCCT GGCGCCCGAG
CCGACGATCG CGCAGCGCAT CGTCCGCGCG AAGCGCACGC TGGCGGCGGC GCACGTGCCG
TTCGAGGTGC CGTCCGCCGC CGCGCGGCCC GCACGGCTCG CGTCGGTGCT CGAAGTGATC
TACCTCGTGT TCAACGAAGG CCATGCGGCG ACCGCCGGCG ACGACTGGAC GCGTCCGGCG
TTGTGCGACG AGGCGCTGCG GCTCGGCCGC GTGCTGGCCG GGCTCGTGCC GGACGAAAGC
GAAGTGCTCG GGCTGGTCGC GCTGATGGAG CTGCAGGCGT CGCGCATGCA TGCACGCACC
GATGCGCAGG GGCGGCCCGT GCTGCTGCTC GACCAGGACC GCAGCCGCTG GGATCCGCTG
CTGATCCGGC GCGGCCTCGC GGCGCTCGAG CGGGCGACCA AGCTCGGCGG CGTGCGCGGC
CCGTATGCGC TGCAGGCCGC GCTGGCTGCG TGCCATGCAC GCGCGCGGCA CGCGTCGGAA
ACGGACTGGG CGCAGATCGT TGCGCTGTAC GACGCGCTCG CCGAAGTCGC GCCGTCGCCG
GTCGTCGAGC TGAACCGCGC GGTGGCGGTG GGGATGGCGT TCGGGCCCGC CGCGGCGCTG
GAAATCGTCG ACGTGCTGCG CGACGATCCG GCGCTCGCGC GCTATCACTG GCTGCCGAGC
GTGCGCGGCG ATCTGCTCGC GAAACTCGGC CGCACGGACG AGGCGAAGGT CGAGTTCCGT
CGCGCGGCGG AATTGACCCG CAACGAGCGC GAAAGGGAAT TGCTGCTCAA GCGGGCGACG
GACGCATGA
 
Protein sequence
MTLEATHRAI EAVWRIEAPK IIARAARVVR DVGVAEELAQ DTLVAALEHW PVDGVPDNPA 
AWLMTAVKRR ALDRVRQESL HAAKRDQLGH EMDALEAHVV PDIAEALADA SDDDIGDDLL
RLIFTSCHPV LSTDARVALT LRLLGGLTTS EIARAFLAPE PTIAQRIVRA KRTLAAAHVP
FEVPSAAARP ARLASVLEVI YLVFNEGHAA TAGDDWTRPA LCDEALRLGR VLAGLVPDES
EVLGLVALME LQASRMHART DAQGRPVLLL DQDRSRWDPL LIRRGLAALE RATKLGGVRG
PYALQAALAA CHARARHASE TDWAQIVALY DALAEVAPSP VVELNRAVAV GMAFGPAAAL
EIVDVLRDDP ALARYHWLPS VRGDLLAKLG RTDEAKVEFR RAAELTRNER ERELLLKRAT
DA