Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5540 |
Symbol | |
ID | 4314429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 2610296 |
End bp | 2611564 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 638153382 |
Product | RNA polymerase ECF-subfamily sigma factor |
Protein accession | YP_777421 |
Protein GI | 115360283 |
COG category | [K] Transcription |
COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.76508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGCTCG AGGCGACCCA CCGTGCGATC GAGGCCGTCT GGCGAATCGA GGCGCCCAAG ATCATTGCCC GCGCCGCACG CGTGGTGCGC GACGTCGGCG TGGCCGAGGA ACTCGCGCAG GACACGCTCG TCGCGGCGCT CGAGCACTGG CCCGTCGACG GCGTGCCCGA CAATCCGGCC GCTTGGCTGA TGACGGCCGT GAAGCGGCGC GCGCTCGACC GGGTCCGGCA GGAGTCGCTG CATGCGGCGA AGCGCGATCA GCTCGGGCAT GAAATGGACG CGCTCGAAGC GCACGTCGTG CCCGACATCG CGGAGGCACT CGCCGACGCG AGCGACGACG ACATCGGCGA CGATCTGCTG CGGCTGATCT TCACGTCGTG CCATCCGGTG CTGTCGACCG ATGCGCGCGT CGCGCTCACG CTACGGCTGC TCGGCGGGCT GACCACGAGC GAGATCGCGC GTGCGTTCCT GGCGCCCGAG CCGACGATCG CGCAGCGCAT CGTCCGCGCG AAGCGCACGC TGGCGGCGGC GCACGTGCCG TTCGAGGTGC CGTCCGCCGC CGCGCGGCCC GCACGGCTCG CGTCGGTGCT CGAAGTGATC TACCTCGTGT TCAACGAAGG CCATGCGGCG ACCGCCGGCG ACGACTGGAC GCGTCCGGCG TTGTGCGACG AGGCGCTGCG GCTCGGCCGC GTGCTGGCCG GGCTCGTGCC GGACGAAAGC GAAGTGCTCG GGCTGGTCGC GCTGATGGAG CTGCAGGCGT CGCGCATGCA TGCACGCACC GATGCGCAGG GGCGGCCCGT GCTGCTGCTC GACCAGGACC GCAGCCGCTG GGATCCGCTG CTGATCCGGC GCGGCCTCGC GGCGCTCGAG CGGGCGACCA AGCTCGGCGG CGTGCGCGGC CCGTATGCGC TGCAGGCCGC GCTGGCTGCG TGCCATGCAC GCGCGCGGCA CGCGTCGGAA ACGGACTGGG CGCAGATCGT TGCGCTGTAC GACGCGCTCG CCGAAGTCGC GCCGTCGCCG GTCGTCGAGC TGAACCGCGC GGTGGCGGTG GGGATGGCGT TCGGGCCCGC CGCGGCGCTG GAAATCGTCG ACGTGCTGCG CGACGATCCG GCGCTCGCGC GCTATCACTG GCTGCCGAGC GTGCGCGGCG ATCTGCTCGC GAAACTCGGC CGCACGGACG AGGCGAAGGT CGAGTTCCGT CGCGCGGCGG AATTGACCCG CAACGAGCGC GAAAGGGAAT TGCTGCTCAA GCGGGCGACG GACGCATGA
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Protein sequence | MTLEATHRAI EAVWRIEAPK IIARAARVVR DVGVAEELAQ DTLVAALEHW PVDGVPDNPA AWLMTAVKRR ALDRVRQESL HAAKRDQLGH EMDALEAHVV PDIAEALADA SDDDIGDDLL RLIFTSCHPV LSTDARVALT LRLLGGLTTS EIARAFLAPE PTIAQRIVRA KRTLAAAHVP FEVPSAAARP ARLASVLEVI YLVFNEGHAA TAGDDWTRPA LCDEALRLGR VLAGLVPDES EVLGLVALME LQASRMHART DAQGRPVLLL DQDRSRWDPL LIRRGLAALE RATKLGGVRG PYALQAALAA CHARARHASE TDWAQIVALY DALAEVAPSP VVELNRAVAV GMAFGPAAAL EIVDVLRDDP ALARYHWLPS VRGDLLAKLG RTDEAKVEFR RAAELTRNER ERELLLKRAT DA
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