| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5527 |
|---|
| Symbol | |
|---|
| ID | 4314416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2598298 |
|---|
| End bp | 2599389 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638153369 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_777408 |
|---|
| Protein GI | 115360270 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.658693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTACGG GGTTTTCCTT GGCCCAGGCC GCGCGTCTCG GCGAGGCCTT CAACCTGGCG
AATCGCCTGC ATGCGCTCAG TGCGGATTAC CAGTTGAAGT ACGTATCCGA AAGCGGGGGA
TTGCTGCAAT CGTCGTCCGG CGTGCAGATC GCCGCCGATG CGCTCGGCGA CGAGCACGGC
CATCGTGCGC GCGCGTTCTT TCATCTTCAC GGTGATCGTG CGTCGGTCAA CTGGAGCGAT
GCGTTGCGCC GCCGCCTGAC CGACATTCAT CGGCATGCGC GCTGGATCGT CGATGCGATG
GACCTGTCGA CGCTCGCGGC GTCGCAGCGG CAGACGGATG CCGGTCAATC GCGAACGGAT
CGCACCCGCG GCGCGGCGGT CACGATCGAA CCGCAGGGCG GCGAGGCCGA CGTGTTCGCG
GCCGTGCTCG ACATGTTCCG CGCCGATCTC GGCGACAGCG CCGCGCAGGA GATCGCGAGC
AACCTGATGC GGCCGGTCGA ACAACGCTAT ACGCAGTCGA TGTGGGCGTT TCGCGAGCTG
AGCGCGAGCC CGTCGATCCG GATGTCGGCG CAGCGGCTGC GCGCGCAGAG CACGAGCCGC
ATTTCGATCG CGGAAGTCGC GCGGACGGCC GCCATGAGCG AGCGCAATTT CCTGCGGCGC
TTCAAGAAGG AAATTGGCGT GACGCCGACC GAATTCGTGC AGCACGTGCG GCTCGAGCGC
GCGTGCCACA TGCTGATCCA CACGACGCTG CCGGCCGACA AGGTCGCGCG GCGCACGGGC
TTCGGCAGCG GCGAGCGGCT GGCAAAGCTG TTTCGCCAGC GTCTGCTCAT GTCGCCGACC
GAATTTCGCA TTGCCGAGCG CGAGCGGATC CTGACGAACG GCGCCGGGGC GGCCGATCCG
CAGTCCGACC CGCAGCCCGC GCCGCGGCCC GCGAAAACCG ACGGCGAGCG GGCGAATCGG
GGCGGGCGCG CCGAGCCGCG CGGGAAAACG GAGCGGAAGA CCGTAAAATC ACCGTGTCGC
GATCACGATC CCCGGTTTCC ATGCCCTTGC TCCCCACTAC CGCCACCGCC CCCTTCTGCC
CGTCGGAAGT AA
|
|---|
| Protein sequence | MSTGFSLAQA ARLGEAFNLA NRLHALSADY QLKYVSESGG LLQSSSGVQI AADALGDEHG
HRARAFFHLH GDRASVNWSD ALRRRLTDIH RHARWIVDAM DLSTLAASQR QTDAGQSRTD
RTRGAAVTIE PQGGEADVFA AVLDMFRADL GDSAAQEIAS NLMRPVEQRY TQSMWAFREL
SASPSIRMSA QRLRAQSTSR ISIAEVARTA AMSERNFLRR FKKEIGVTPT EFVQHVRLER
ACHMLIHTTL PADKVARRTG FGSGERLAKL FRQRLLMSPT EFRIAERERI LTNGAGAADP
QSDPQPAPRP AKTDGERANR GGRAEPRGKT ERKTVKSPCR DHDPRFPCPC SPLPPPPPSA
RRK
|
|---|
| |