| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5502 |
|---|
| Symbol | |
|---|
| ID | 4314391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2568917 |
|---|
| End bp | 2570251 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638153344 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_777383 |
|---|
| Protein GI | 115360245 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.261439 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCCA TGCAATCAAC GAAACGGAAC CACAAGGAGT CCGACATGGA GCAGACAGAA
TCGCCCGTCG TATTCGCCGC GCGTGACGAC GCGTCCGATG TGCGTTTTCC GCACGACGAC
GGCTCGCGCG TGCCCTATAA GGTGTTCAGC TCACGCGCGG TCTACGATCG CGAGCAGGAA
CGCATCTTCC GCGGGCCCAC TTGGAACTTC GTCGCGCTGG AAGCGGAAAT CCCGAAGGCC
GGCGACTTCA AGAGCACGTT CGTCGGCGAT ACGCCGGTCG TCGTCACGCG CACCGAGGAC
GGCACGCTGT CCGCGTGGGT GAACCGCTGC GCGCACCGCG GCGCGCAGGT CTGCCGCAAG
TCGCGCGGCA ACGCGAGCTC GCACACGTGC GTGTACCACC AGTGGAGCTT CGACAACCAG
GGCAACCTGC TCGGCGTGCC GTTCCGGCGC GGCCAGAAGG GGATGACCGG GATGCCGGCC
GACTTCGACC CGAAGCAGCA CGGGCTGCGC AAGCTGCGCG TCGACAGCTA TCGCGGGCTC
GTGTTCGCCA CCTTCAGCGA TGAAGTGATG CCGCTGCCGG ATTATCTCGG CGAGCAGATG
CGGCCGTGGA TCGACCGAAT CTTCCACAAG CCGATCGAGT ATCTCGGCTG CACGAGACAG
TATTCGAAGT CGAACTGGAA GCTGTACATG GAGAACGTGA AGGACCCGTA TCACGCGAGC
ATGCTGCATC TGTTCCATAC GACCTTCAAC ATCTTCCGTG TCGGGATGAA GGCTCGCTCG
ATTCCGGATG CGAATCACGG GCTGCACAGC ATCATCACGG TGACGAAGAC GGGCGACGAC
ACGTCGGCCG CGTACAAGCA GCAGAACATC CGCTCGTTCG ACGAGGGCTT CCATCTGGAA
GACGAGTCGA TCCTCGATCT CGTGTCCGAA TACGACGAGG ACTGCACGAA CCATATCCAG
CCGATCTTCC CGCAGCTCGT GATCCAGCAG ATCCACAACA CGCTGGTCGC GCGCCAGATC
CTGCCGAAGG GGCCGGACAA CTTCGAGCTG ATCTTTCACT TCTTCGGCTA CGCGGACGAC
ACGCCCGAGC TGCGCGCGCT GCGCATCAAG CAGGCGAACC TGGTCGGGCC GGCCGGCTAC
ATCTCGATGG AGGACACCGA GGCGACCGAG CTCGTGCAGC GCGGCACGGT GCGCGACGCC
GATGCGACGT CGGTGATCGA GATGTCGCGC GGCAATCCGG ACCAGCAGGA CACGGTGATC
ACCGAAAGCC TGATCCGCAA GTTCTGGGTC GGCTACCAGA AGCTGATGGG CTATCGAAGC
GGGAGCGCGG AATGA
|
|---|
| Protein sequence | MGAMQSTKRN HKESDMEQTE SPVVFAARDD ASDVRFPHDD GSRVPYKVFS SRAVYDREQE
RIFRGPTWNF VALEAEIPKA GDFKSTFVGD TPVVVTRTED GTLSAWVNRC AHRGAQVCRK
SRGNASSHTC VYHQWSFDNQ GNLLGVPFRR GQKGMTGMPA DFDPKQHGLR KLRVDSYRGL
VFATFSDEVM PLPDYLGEQM RPWIDRIFHK PIEYLGCTRQ YSKSNWKLYM ENVKDPYHAS
MLHLFHTTFN IFRVGMKARS IPDANHGLHS IITVTKTGDD TSAAYKQQNI RSFDEGFHLE
DESILDLVSE YDEDCTNHIQ PIFPQLVIQQ IHNTLVARQI LPKGPDNFEL IFHFFGYADD
TPELRALRIK QANLVGPAGY ISMEDTEATE LVQRGTVRDA DATSVIEMSR GNPDQQDTVI
TESLIRKFWV GYQKLMGYRS GSAE
|
|---|
| |