| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5484 |
|---|
| Symbol | |
|---|
| ID | 4314373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 2550303 |
|---|
| End bp | 2551757 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638153326 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_777365 |
|---|
| Protein GI | 115360227 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.213646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC TACTCGTCGC GCTGGCCGTC AGCGCGTTCG CCGCCGGCTG CGCGGTGCAG
CCCGCGCAGC ATCCCGCGCT GCACGATTCC GTTCAATCGC TCGCGCCCGC CGCGTGGGAC
ACCGACGTGC CGCGCGCGGA CATCGACGCC GCCGCGTGGT GGGCGCGCTT CCACGATCCC
GTGCTCGACC GGCTGATCGC GACCGTGCTC GACGGCAACC TCGATCTGCA GGCCGCCACC
GAGCGCGTGA AGCAGGCGCA GGCGCTGACC GTGCAGAAGC GCGCGGCGCT GCTGCCCGAA
CTCGACGCGA CCGCGCGGGC GTCCGACGCG CGCCAGAACA CGCCGCCGCC GCTCGGCTAC
GTGCGGCAGG CCGGCATCGG GCTCGCGCTG AGCTGGTCGC CGGACGTGTT CGGCGGGGAA
CGGCTCGACC TGCTGGCCGC CCAGGCCGAG CTAGTCGGAC AACGGCATGC GGAAGACGCG
ATGCGGCTCG CGCTCGCGGC CGATGCGGCG TCCGCGTACG TCGACCTGCG CTGGGCGCAG
CAGGAACTGA AGATCCTGCA GGACAACGCG GCGATCCGTC GGCATGCGCT CGAGCTCACG
CGCAAGCGCC AGGCGTTCGG GCTGTCGACC GAACTCGACG TCACGCGCGC GCAGAACCAA
CTCGATGCGC TCGAAGCGCG GATTCCGCCG ACGCAGGCGC AGATCGCGCA TCAGCTCAAC
CTGATCGCCG TGTATTCGGG CCGCACGCCC GAATCGGTCG ACCGGCTCGT GCTCGCGCAG
GCCGGCGCGA TTCCCGCGCC GCCCGCCGGG TCGCCCACCA CGCTGCCTTC GCAGGCGCTG
CTGCGACGGC CTGACGTGCT CACCGCTTAC GCGCAGGTCG AACGGCGCGC GGCGCAGGTC
GGTGTCGCGA AGGCCGAGCG CTATCCGAAG TTCTCGCTGA ATCTGGCGGA CGGGATTCTT
GCCGCGTCGT ACCTCGGCTT GCCGACGCTG ACCGACAACC TGTTCAGCGC GGCGTTGAGC
GCGACCAGCC CGATCTTCAA CGCGGGGCGG ATCACGGCCG ACATCACGCA GAGCGAAAGC
CGGATGCGCG AGTCGGAACT CGGTTTGCGG CAGACGATGC TGCAGGCGCT GCGGGAAGTC
GAGGATGCGC GCGCGAACCT CGTCAGCAGC GATGAAGCGG CACGGCGGCT CGACAGTGCG
CTCGCGGCGT CGGACAAGGC GCTCGGGCTG GCGAATCAGC TCTACAAGGG CGGCGCGACG
GATTTTCTGG ATGTGCTGTC CGCGCAGGAG GTCTATCTGC GGGACTCGGA TGCGCTCAAT
CAGGTGAGGC GCGAGCATGC GCTGGCCGCG GTTGCGTTGT ATCGGTCGCT TGGCGGTGGA
TGGAGCAGGA ACGATGCGGC GGGCGGGACG GACACGCAAG CGGTGGCCGC TGCGGCCACG
GTCGCGAAGG ACTGA
|
|---|
| Protein sequence | MKKLLVALAV SAFAAGCAVQ PAQHPALHDS VQSLAPAAWD TDVPRADIDA AAWWARFHDP
VLDRLIATVL DGNLDLQAAT ERVKQAQALT VQKRAALLPE LDATARASDA RQNTPPPLGY
VRQAGIGLAL SWSPDVFGGE RLDLLAAQAE LVGQRHAEDA MRLALAADAA SAYVDLRWAQ
QELKILQDNA AIRRHALELT RKRQAFGLST ELDVTRAQNQ LDALEARIPP TQAQIAHQLN
LIAVYSGRTP ESVDRLVLAQ AGAIPAPPAG SPTTLPSQAL LRRPDVLTAY AQVERRAAQV
GVAKAERYPK FSLNLADGIL AASYLGLPTL TDNLFSAALS ATSPIFNAGR ITADITQSES
RMRESELGLR QTMLQALREV EDARANLVSS DEAARRLDSA LAASDKALGL ANQLYKGGAT
DFLDVLSAQE VYLRDSDALN QVRREHALAA VALYRSLGGG WSRNDAAGGT DTQAVAAAAT
VAKD
|
|---|
| |