| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5463 |
|---|
| Symbol | |
|---|
| ID | 4314352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2526439 |
|---|
| End bp | 2527212 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638153305 |
|---|
| Product | cationic amino acid ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_777344 |
|---|
| Protein GI | 115360206 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC TCGCCCTCAG TATTGCCCTC GCCTGTATCG CGGTGGGTGC CCACGCCAAG
GATTGGTCGA CGATCCGGTT CGGCGTCGAC GCCAGCTATC CGCCATTCGA ATCGAAGGAC
GCAAGCGGCA AGGTCGTCGG CTTCGACGTC GATCTCGGCA ACGAAATCTG CGCGCGCCTG
AAGGCGAAAT GCGTGTGGAT CGAGAACGAC TTCGACGGGA TGATCCCGGC GCTGAAGGCG
AAGAAGTTCG ACGGCGTGCT GTCGTCGATG TCGATGACGC CGGCGCGCGC CGAACAGATC
GCGTTCTCCG ACAAGCTGTT CAACACGCCG ACGCGGCTCG TCTCGAAGAA GGGCGCGCAC
CTGCAGCCGA CGGCCGAATC GCTGAAGGGC AAGTCGGTCG GCGTCGAGCA GGGCACGATC
CAGGAAACCT ACGCGAAGGC CTACTGGGCG CCGAAGGGCG TGCAGATCGT GTCTTACCAG
AACCAGGACG GCGTGTACCA GGACCTGATG TCCGGCCGCC TCGATGCCGC GCTGCAGGAC
GCGGTGCAGG CCGACCTCGG CTTCCTGAAG ACGCCGCGCG GCGCGAACTT CGAATTCGCG
GGCAAGGACA TCGACGATCC GAAGACCCTC GGCAACGGCG CGGGCATCGG CCTGCGCAAG
GACGACGCCG ACCTGAAGGC GAAGATCGAC CACGCGATCG CCGACATCAT CAAGGACGGC
ACGTACAAGA AGCTCGAGAA GAAGTACTTC GCATTCGACG TCTACGGCGG CTGA
|
|---|
| Protein sequence | MKKLALSIAL ACIAVGAHAK DWSTIRFGVD ASYPPFESKD ASGKVVGFDV DLGNEICARL
KAKCVWIEND FDGMIPALKA KKFDGVLSSM SMTPARAEQI AFSDKLFNTP TRLVSKKGAH
LQPTAESLKG KSVGVEQGTI QETYAKAYWA PKGVQIVSYQ NQDGVYQDLM SGRLDAALQD
AVQADLGFLK TPRGANFEFA GKDIDDPKTL GNGAGIGLRK DDADLKAKID HAIADIIKDG
TYKKLEKKYF AFDVYGG
|
|---|
| |