Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5454 |
Symbol | |
ID | 4314343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 2516322 |
End bp | 2517854 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638153296 |
Product | diguanylate cyclase |
Protein accession | YP_777335 |
Protein GI | 115360197 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.488047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCAT ACCCGCTGCC TGCTACGCTG CGCCGCCATA CCGTGTCGGC CGTGGCCCGC ATTCTGTCGC CCCGCGGCGT ACTCGTCGCG GGCATCGTGC TGTTGCTGCT CAGCTGGGGA TTTTCGACGT CGCTTTTAAT CGAGGCACGC AACGACGCGT ACGGCCATGC GGTCGAAAAT GCGCGCAATC TGATGCTGCT GATCGAGCGC GATATTTCAC GCAATATCGA ACTTTATGAT CTGTCACTAC AAAACGTGGT CGACGGTCTC TCTGATCCGG AACTGATGGC ATTGCCGCCG CGCCAGCGTC ACCGGCTGCT GTTCGACCGC GCCGCGACCG GCGCGTATCT CGGCGCCATT TTCGTGATGG ACCCGCACGG CAATATCGTG ATCGATTCGG CCACATCGCC GCCGCGGCCA GGCAATTTCG CCGATCGCGA CTATTTCACC GTGCATCGTG ACCGGCTTGC GCCGGGCCTC TACATCAGCC GGCCCTATGC GTCCCGGCTG CGCGGCGGCG CACTGACGAT CGCGCTCAGC CGCCGGATCG TCAAGGCCGA CGGCACGTTC GGCGGGATCG TCGTCGGCAC GCTGAACATC GACTACTTCC GCGCGCTGCT TGACGGGATC GCCGTCGGCA GGCACGGCAG CGCCGCGGTG ATCGAAGACA ACGGCGCGCT CGTGTCCCGC CTGCCGTACG ACGCGCGCGT GGTCGGCCTC GATCTGCACG ACTCGCCGCT CTTCATCGAG TCGCAGCGCC GCAGCGAAGG CGCGCTCACG GGCGTCGGCG CGATCGACGG CGTGCGCCGT ATCTATGTTT ACAAGCATCT CGCGAATCTG CCGCTGCTCG TCGACGTCGC GCCCGCCGAG ATCGACATCT ACGCATCGTG GCGCCATCGC GCGATCTGGA CCGCCGTGCT GATGGGCCTG TTCACCGCGT TCATCGCGTG GGGCTCGCTC GCGCTGTCGC GCGAACTCAG GCGCCGGCAG ATCGCCGAGT CGAAGCTGTA CCGGCTCGCG CACACCGATT CGCTGACCGG CCTCGACAAC CGCGGCACCT TCGACGCGGT GCTCGCGAAG GAAGCGCAGC GCGCGTCGCG CAGCGGCCGC CCGCTGTCGG TGCTGTTCGT CGACGTCGAT CATTTCAAGG CGTTCAACGA CTACTACGGC CACCTCGCCG GCGACGACGT GCTGCGCCGT GTCGCGCAAT CCGCGTCGCG CTGCCTGCGT CGCGACAGCG ACCACGTCGC GCGCTACGGC GGCGAGGAAT TCGTCGTCAC GCTGCCCGAC ACCGATGCGC GGGGCGCGGC GACCGTCGCC GAGACGATCC GCCGCGCGAT CGCCGGGCTC GACATCGCGC ACGGCCGCAG CCCGTACGGG CACGTGACGA CGAGCATCGG CACCGCGACC GCCACCGGCG GGCGCGTGAA CGCCGCGGCG CTGCTGCGGC AGGCCGACGA GGCGCTGTAC CGCGCGAAGT CCGGCGGCCG CAATCGCGTG TCCGATGCCG AGGCGAGCAC GGCCGACGCG TGA
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Protein sequence | MNSYPLPATL RRHTVSAVAR ILSPRGVLVA GIVLLLLSWG FSTSLLIEAR NDAYGHAVEN ARNLMLLIER DISRNIELYD LSLQNVVDGL SDPELMALPP RQRHRLLFDR AATGAYLGAI FVMDPHGNIV IDSATSPPRP GNFADRDYFT VHRDRLAPGL YISRPYASRL RGGALTIALS RRIVKADGTF GGIVVGTLNI DYFRALLDGI AVGRHGSAAV IEDNGALVSR LPYDARVVGL DLHDSPLFIE SQRRSEGALT GVGAIDGVRR IYVYKHLANL PLLVDVAPAE IDIYASWRHR AIWTAVLMGL FTAFIAWGSL ALSRELRRRQ IAESKLYRLA HTDSLTGLDN RGTFDAVLAK EAQRASRSGR PLSVLFVDVD HFKAFNDYYG HLAGDDVLRR VAQSASRCLR RDSDHVARYG GEEFVVTLPD TDARGAATVA ETIRRAIAGL DIAHGRSPYG HVTTSIGTAT ATGGRVNAAA LLRQADEALY RAKSGGRNRV SDAEASTADA
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