| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5363 |
|---|
| Symbol | |
|---|
| ID | 4314252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2405546 |
|---|
| End bp | 2406556 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638153204 |
|---|
| Product | 3-hydroxybutyryl-CoA dehydrogenase |
|---|
| Protein accession | YP_777244 |
|---|
| Protein GI | 115360106 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.535982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCCG CCCTCGACGT GACGCGCGTG CACGTGCTCG GCGCGGGACG CATGGGGCAG
GGGATCGCGC TCGTGTTCGC ATTCGCGGGC CTCGACGTGA TGCTGATCGA CTTCAAGCCG
CGCGACGCGC AAGGGTGGCG TGCATTCGAG GAGCGCACGC GCGGCGAGAT CCTGCGGCCG
CTGCATGCGC AGGTCGCGCT CGGCCGCATC GATCGCGCGC AGGCCGACGC CGTCGTCGCG
CGCATCGCGC TGGTTCACCG CGACGGCGCG GCGCACGCGG TGCGCGACGC CGGAATCGTG
TTCGAAGCGC TGCCGGAAGT GCTCGACGCG AAGGCTGACG CGCTGCGCTG GATCGGAGAA
CATGTCGGTG CGCGTGCAAC CATCGCGTCG ACGACGTCGA CGTTCGTCGT CACCACGTTG
CAGCGCCATG TCGCGCACCC GGAGCGGATG CTGAACGCGC ACTGGCTGAA CCCGGCGCTG
CTGATGCCGC TCGTCGAGAT CAGCCGCAGC GACGTGACGG ATCAGTCGAT TGTCGATGCG
CTCGCCGCGC TGCTCGAGCG CGTCGGCAAG AAGCCGGTGA TCTGCGGGCC GGCGCCCGGC
TACATCGTGC CGCGAATCCA GGCGCTCGCG ATGAACGAGG CCGCGCGGAT GGTCGAGGAG
GGCGTCGCGA GCGCCGCGGA CATCGACACG GCGATCCGCA CCGGCTTCGG CCCGCGCTTC
GCGGTGCTCG GGCTGCTCGA GTTCATCGAC TGGGGCGGCT GCGACATCCT GTACTACGCG
TCGACGTATC TCGCCGGCGA GATCGGTCCG CGCTTCGCGC CGGCCGCGAG CGTCGTGCGC
AACATGGAGG CCGGGCGCGA CGGCGTGCGC ACAGGTACCG GGTTCCACGA CTATGCGCAG
GTCGATGTGC CGGCTTACAT GCAGCAACGG CTCGGCGAGT TCGCGCGCCT GCTCGACCAC
CTCGGGCTCG CGCCCGCGTT CGATGCCGCA CGGCGCGATT CCGGGGCCTG A
|
|---|
| Protein sequence | MTAALDVTRV HVLGAGRMGQ GIALVFAFAG LDVMLIDFKP RDAQGWRAFE ERTRGEILRP
LHAQVALGRI DRAQADAVVA RIALVHRDGA AHAVRDAGIV FEALPEVLDA KADALRWIGE
HVGARATIAS TTSTFVVTTL QRHVAHPERM LNAHWLNPAL LMPLVEISRS DVTDQSIVDA
LAALLERVGK KPVICGPAPG YIVPRIQALA MNEAARMVEE GVASAADIDT AIRTGFGPRF
AVLGLLEFID WGGCDILYYA STYLAGEIGP RFAPAASVVR NMEAGRDGVR TGTGFHDYAQ
VDVPAYMQQR LGEFARLLDH LGLAPAFDAA RRDSGA
|
|---|
| |