Gene Bamb_5340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5340 
Symbol 
ID4314229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2382509 
End bp2383630 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content69% 
IMG OID638153181 
ProductAraC family transcriptional regulator 
Protein accessionYP_777221 
Protein GI115360083 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.795949 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.566386 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTTC GGGACAATTG TTTTAGTATT TGGGCCAAAT CGGCGCTTCG AGGGTTTCTC 
CGCATGAGCT TCTGGGACTT CACCCGGAGT CCGGCCAGTG CCCGGCTGCT GGCCGATTTC
GGCGACGAGC GCGGCGTGTC GCGCACGAAG CTGCTGTCCG GCACGGGCCT CGCGGACGCG
CAGCTCGACG ATCCGAACGT CGAGGTGACG GCCGCGCAGG AACTGCGGCT GACCGGCAAT
CTGCTGCGCG CGCTCGGGCG TGCGCCGGGC CTCGGGTTCG AGGTCGGGCA GCGCTATCAC
TTCTCCGCAT ACGGCGTGTG GGGCTACGGA CTGATCGCGA GCGCGACCGC GCGCGACGCG
CTGGCGCTCG CGATGCGCTT CCTGCCGCTC ACGTATGCGT TCACGGTGAT CACGTACCGC
GAGGAAGCGC ACACGTGCGT GCTCAATTTC GGCGCGCCGG AGCTCGATGC CGACCTGAGC
CGGTTCCTCG TCGAACGCGA CATGACGGCC GCCGTCGTGC TGCTGCAGGA AATCGGCGGC
GACGATTTCG CGTTGTCGCG CTTCACGATG CAGGCCGCGA GCGCGGCGAG CGTAGCCACG
TCCACACGCG CGCCCGCACC GCGCATCGCC GGTGTCGAAC CCGCGTTCGG CGCGCGTGCG
AACAGCGTCG CGTTCGACCG CGGCTTTCTC GACCGGCCGC TGCCGCATGC GAACCCGCTG
ACGGTTTCGA TGTGCGAGCA GATGTGCGTG CAGCTGGTCG AAGCGCGACG CGCGCGGGTC
GGCACGTCGG AGATGGTGCG GCAATACCTG ACGGCGACGC CCGGCAACGT GCCGTTCTCG
CTCGACGACA TCGCGCGGCT GATGAACACG AGCCCGCGCA CGCTGAAGCG CCGGCTGCAG
GAGGAAGGCA CGACATTCCG CACGCTGCTC GCGCAGGCGC GCGGTGCGAT GGCCGAGACG
CTGCTCGGCG ATGCGCACCT GTCGCTGACG GAAGTCGCCG AGCGGCTCGG CTTCAGCGAC
CTGTCGAGTT TCTCGCAGGC GTTCAAGCGC TGGTATGGTG TGCCGCCGGG CACCTACCGC
AGCGGCCTGC TGCGCGACGG CGCCCGCACC GACGCGGCGT AG
 
Protein sequence
MLLRDNCFSI WAKSALRGFL RMSFWDFTRS PASARLLADF GDERGVSRTK LLSGTGLADA 
QLDDPNVEVT AAQELRLTGN LLRALGRAPG LGFEVGQRYH FSAYGVWGYG LIASATARDA
LALAMRFLPL TYAFTVITYR EEAHTCVLNF GAPELDADLS RFLVERDMTA AVVLLQEIGG
DDFALSRFTM QAASAASVAT STRAPAPRIA GVEPAFGARA NSVAFDRGFL DRPLPHANPL
TVSMCEQMCV QLVEARRARV GTSEMVRQYL TATPGNVPFS LDDIARLMNT SPRTLKRRLQ
EEGTTFRTLL AQARGAMAET LLGDAHLSLT EVAERLGFSD LSSFSQAFKR WYGVPPGTYR
SGLLRDGART DAA