Gene Bamb_5302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5302 
Symbol 
ID4314191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2341431 
End bp2342402 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content69% 
IMG OID638153143 
Productornithine cyclodeaminase 
Protein accessionYP_777183 
Protein GI115360045 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.599287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACAG ACGCTCAACT CCTTCTTCTC GACCGCGACG TGGTCGAACC GGCCCTTCAA 
GCCGAACAAG TGACGGCGGC GGTCCGCGAG GCCTTCGTGC TGCATAGCCG ACGCGCCGGA
CGCGTGTTCC CGGTCGTCCG CGAGAAGCTG CATACCGGCG GGGTATTCGG AATCAAGTCG
GGCGACGTCG CGAGCCAGGA TCTGCTCGGT TTCAAGGCGG CCGGGTTCTG GCCCGGCAAT
CGGGGCCGCG GTGGCGAACC GCATCAGGCG ACGATCGCGC TGTTCGATCC GGCCACCGGC
CGCCCGCTCT GCATCATGGA CGGCAACGCG ATCACCACGG CCCGGACCGG TGCGGCAGGC
GGCCTCGGGC TGCAGGCGCT CGCCCGCCGC GACAGCACGC GCATCTGCGT GTTCGGCACC
GGCGTGCAGG CGCGCGTCCA GCTCGACTAT GCGATCAGGC TGCTGCCGCA ACGGTGCTCG
GTGCAGTACG TGACAGTCAG CGGCGAAGTC GATCCGGAGT TCGAATCGGC ATTTCGCGAA
CGCTGCGACA TCCGCGTCGC ACGAGACCGC AACGATGCGG TGGCCGACAG CGACGTGGTC
ATCACGGCGA CACCGGGCGG CGGCCCGCTG TTCGATGCGG ATGCGGTTCA GCCAGGCACG
CATCTGACGT GCGTGGGCGC GGATACCGCC GGCAAGCGCG AACTTCCCGA ACGCGTATTG
GAGCGTGCGC GGATTTTCGT GGACGATCAC GAGCAGGCGC GCAGCATCGG CGAGTGTCAG
TGGGCGCCGG ATTTGCCGCG CACTGAAATC GGCGACGTGC TCTCCGGGGC TGTGTCGGTC
GATCGCGCGG CGAGCGAGAT CACCGTGTTC GACATGACGG GGCTCGCGCT GCAGGACCTG
ACCGTTGCGC GTTTCCTGTA TCGGCACGCG GTCGAGCGCG GCGCGGGACG CGCCATCCCG
TGGCCGTGGT GA
 
Protein sequence
MPTDAQLLLL DRDVVEPALQ AEQVTAAVRE AFVLHSRRAG RVFPVVREKL HTGGVFGIKS 
GDVASQDLLG FKAAGFWPGN RGRGGEPHQA TIALFDPATG RPLCIMDGNA ITTARTGAAG
GLGLQALARR DSTRICVFGT GVQARVQLDY AIRLLPQRCS VQYVTVSGEV DPEFESAFRE
RCDIRVARDR NDAVADSDVV ITATPGGGPL FDADAVQPGT HLTCVGADTA GKRELPERVL
ERARIFVDDH EQARSIGECQ WAPDLPRTEI GDVLSGAVSV DRAASEITVF DMTGLALQDL
TVARFLYRHA VERGAGRAIP WPW