| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5294 |
|---|
| Symbol | |
|---|
| ID | 4314183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2335174 |
|---|
| End bp | 2336313 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638153135 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_777175 |
|---|
| Protein GI | 115360037 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.264331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCG GCGTGTTCGG CCTCGTCACC GCCGAATTCC TGCCCGCGAG TCTGCTCACG
CCGATGGCCG ACAGCCTCGG CGTGACCGAA GGCGTGGCCG GCCAGGCCGT CACGGCCACC
GCGACCGTCG CGCTCGTCAC GAGCCTGCTG ATCTCCGCGC TGACGCGCAC GATCGACCGC
CGGCGTGTGC TGCTCGCGTT CTCCGTGCTG CTCGTCGCCT CGAATCTCGC GGTCGCGTTC
GCGCCCGACC TGACGACGTT GCTGATCGGC CGCGTCGTGC TCGGCGTCGC GCTCGGCGGC
TTCTGGACGA TGGCGACGGC CACCGCGATG CGGCTCGTGC CGACCGCGAT GGTGCCGCGC
GCGCTGTCGA TCATCTTCAG CGGCGTGGCG GTCGCGACGA TCGCGTCGGC GCCGATGGGC
AGCTACTTCG GGCACCTGAT CGGCTGGCGC AACGTGTTCC TGATCGCGGC CGGGCTCGGC
GGCGTCGCGT TCGTGTCGCA GGTGATGACG CTGCCGTCGA TGCCGCCGAG CGGCACGACG
CGGCTGCGCA CGCTCGTCGA CGTGCTGCGC CGGCCGACCG TCGGCCTCGG GATGTTCGCG
ACGATCCTCG TGTTCACCGG CCATTTCGCG TTCTTCACGT ATCTGCGGCC GTTCCTCGAA
CAGGTCGCCG GCGTCGGCGT GAACGGGCTG TCGGCGATCC TGCTCGGCTA CGGGATCGCG
AACTTCGTCG GCACGTCGCT CGCGGGCCGC GTGCTCGAAC ACCGGCTGCG GCCGATGCTG
ATCGGGATGC CGGCGCTGAT GGTCGTGCTC GGCATCGCGC TCGTCGCGCT CGGCCGCGCG
CCGATGATCG ACGCGGTGCT CGTCGCGTTG TGGGGGATGG CGTTCGGCGG CGTGCCGGTT
GCCTGGTCGA CGTGGGTCAC GCGCACCGTG CCCGATGAAG CCGAGAGCGC GGGCGGGCTG
ATCGTCGCGG CGATCCAGCT CGCGATCGCG ACGGGCGCGG CGGCCGGCGG CGTCGTGTTC
GACGCGAACG GCGCGGGCGG TGTGTTCCTG AGCGCGGCCG CGGTGCTGGC CGTCGCGGTC
GCGACAATCG TGACCGGCGT GCCGAAGCGG GTTGGCGTCG CACGGGCGCT GGCCGAGTGA
|
|---|
| Protein sequence | MTLGVFGLVT AEFLPASLLT PMADSLGVTE GVAGQAVTAT ATVALVTSLL ISALTRTIDR
RRVLLAFSVL LVASNLAVAF APDLTTLLIG RVVLGVALGG FWTMATATAM RLVPTAMVPR
ALSIIFSGVA VATIASAPMG SYFGHLIGWR NVFLIAAGLG GVAFVSQVMT LPSMPPSGTT
RLRTLVDVLR RPTVGLGMFA TILVFTGHFA FFTYLRPFLE QVAGVGVNGL SAILLGYGIA
NFVGTSLAGR VLEHRLRPML IGMPALMVVL GIALVALGRA PMIDAVLVAL WGMAFGGVPV
AWSTWVTRTV PDEAESAGGL IVAAIQLAIA TGAAAGGVVF DANGAGGVFL SAAAVLAVAV
ATIVTGVPKR VGVARALAE
|
|---|
| |