| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5285 |
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| Symbol | |
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| ID | 4314174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 2326301 |
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| End bp | 2328304 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638153126 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_777166 |
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| Protein GI | 115360028 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.445502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACG AAAACGATAG CGCGGTGCTT GAAGCGCACG TCGGTACGCG CAGCCCCTGC
TGGCGTCTCG GCAGCGACAG CAATGCGCTC GAGCTGGCGG CCGTCCGCGG CTTGACCAAC
GTCGCGGTGG CGCTGACCGG CGAGCAGGCC GCGCGAATTC GCGCGCTCAC CGGTGTCACG
TCGCACCTCG TGCTCGACCT TGCGCTGTTC GGCGACACGG TCACCCTCCA TCTGGTCGGC
CGCAAGGTCG ACACGTCGAA CTGGGCCGGC ACGGCGTCCG CCTATTCCGA TACCGCGTCG
GTCGCGACCG ACCTCTCGCA CGGGCTCGCG TTCGCCGAGC AGGTCGTGTC CGAAGTGAAT
TCGCTCGTCG TGATCCTCGA CCGCAACGGC ATGGTGCAGC GCTTCAACCG CCTGTGCGAG
GAAGTGACGG GCAAGCGCGA GGTCGACGTG ATCGGCCGCA GCGCGTTCGA GCTGTTCATG
AGCCCCGAGC AGGGCGCGCA GTCGCGCAGC AACATCACCG GCTTTTTCGC GAGCAACCGT
TCGTTCGCGG TCGAGCGCTA CATCAACACG GTCAACGGGC CGCGCCTGTT CCAGTTCCGC
AACAAGTTCG TGCAGAGCGG CAGCGGCGCC GACGAGCAGT ACCTGATCTG CTCGGGCATC
GACGTCACCG AGGAGCGCAA CGCGCAGCAG CGGCTCACCG AACTCGCGAA CACCGACATG
CTGACCGGCC TGCCGAACCG CCACGCGATC AGCGAGCGCA TCGGCGCCGC GCTGGCCGCG
GATCGCACCG ACATGCGCGG CCAGGTCGGC ATCCTGTTCC TCGATCTCGA CAACTTCAAG
CGCGTCAACG ATCACTACGG GCACATCACC GGCGATCGCC TGCTGCAGGA CGTGTCCACG
ATCATCAGCG GCTGCCTGCC GTCCGGTGCG ACGCTCGCGC GGCTCGGCGG CGACGAATTC
CTGGTGCTGT TCGAGCACGG CACGCGGCCG CTGCTCGAAG CGACCTCGCA GATCATCCTC
GAACGGCTGC GCACGCCGAT CCACCTCGGG CTGATGGAGA TCTACACGAG CTGCTCGATC
GGCATCGCGA TGTATCCGCA GCACGGCGAT TCGCTCGAAA CGCTGATCCG CAGCGCCGAC
ACCGCGATGT ACGTCGCGAA GGAAGAGGGC AAGCATACGT ACCGCGTGTT CTCGCTGGAG
ATGAACCAGA AGGTCGCGAA GTACATGTGG CTCGACACGA ACCTGCGCAA GGCGCTCGAG
GAAGAGCAGT TCGTGCTGCA CTACCAGCCG GTCGTCGACC TCGCGAGCGG CGACGTGCGC
AGCGTCGAGG CGCTGATCCG CTGGCAGTCG CCCGATCGCG GGCTCGTCGC GCCGATCGAG
TTCATCCACT TCGCCGAGGA GTCGGGGCTG ATCGCGCCGC TCGGACGCTG GGTGATGCGC
ACCGCGGCAG CGCAGGCCGC CGCATGGAAG GCGAAGGGGC TCGGCGTGCG GGTCGCGGTG
AACGTGTCCG CGCGGCAACT GCAGGACATG AACATCGTCC ATCAGTTCGC ATCGATTCTC
GCCAGCGCGG GGCTGAAGCC GAGCCTCGTC GACATCGAGC TGACGGAAAG CAGCTTCATC
GAGGATGAGG AAACGGCGCA CGAGCTGATG AAGGAATTCC GCCAGCTCGG CGCGAAGATT
CACCTCGACG ATTTCGGCAC CGGCTATTCG TCGCTGTCGC AACTGTCGCG GCTGCCGCTC
GATTCGATCA AGCTCGATCG CAGCTTCATC ACGGGCATCG ATCGCAATCC GCGCTCGCAG
GCGCTGGTGC GCTCGGTCGT GTCGCTCGCG AAGGCGCTGA GTTTCGCGGT CGTCGCCGAA
GGCGTCGAGA CGCCGGGGGA GGCGGAATTC CTGAAGCAGG TCGACGTCGA CCACGCGCAG
GGTTTCTACT TCGCGCGGCC GATGCCGGCC CAGGCGTTCG AGGGCTGGCT CGCGGAAACG
AGAAAGCTCA GGCTGATCGC CTGA
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| Protein sequence | MDDENDSAVL EAHVGTRSPC WRLGSDSNAL ELAAVRGLTN VAVALTGEQA ARIRALTGVT
SHLVLDLALF GDTVTLHLVG RKVDTSNWAG TASAYSDTAS VATDLSHGLA FAEQVVSEVN
SLVVILDRNG MVQRFNRLCE EVTGKREVDV IGRSAFELFM SPEQGAQSRS NITGFFASNR
SFAVERYINT VNGPRLFQFR NKFVQSGSGA DEQYLICSGI DVTEERNAQQ RLTELANTDM
LTGLPNRHAI SERIGAALAA DRTDMRGQVG ILFLDLDNFK RVNDHYGHIT GDRLLQDVST
IISGCLPSGA TLARLGGDEF LVLFEHGTRP LLEATSQIIL ERLRTPIHLG LMEIYTSCSI
GIAMYPQHGD SLETLIRSAD TAMYVAKEEG KHTYRVFSLE MNQKVAKYMW LDTNLRKALE
EEQFVLHYQP VVDLASGDVR SVEALIRWQS PDRGLVAPIE FIHFAEESGL IAPLGRWVMR
TAAAQAAAWK AKGLGVRVAV NVSARQLQDM NIVHQFASIL ASAGLKPSLV DIELTESSFI
EDEETAHELM KEFRQLGAKI HLDDFGTGYS SLSQLSRLPL DSIKLDRSFI TGIDRNPRSQ
ALVRSVVSLA KALSFAVVAE GVETPGEAEF LKQVDVDHAQ GFYFARPMPA QAFEGWLAET
RKLRLIA
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