| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5224 |
|---|
| Symbol | |
|---|
| ID | 4314114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 2260974 |
|---|
| End bp | 2264144 |
|---|
| Gene Length | 3171 bp |
|---|
| Protein Length | 1056 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638153066 |
|---|
| Product | DNA helicase related protein |
|---|
| Protein accession | YP_777106 |
|---|
| Protein GI | 115359968 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0661737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.788019 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGATA CAGCAAGCGT ACTACGTTAC TGGCGGGCGA TTGAAATTTT TTGTCCGCAA
TCCGTTCCGA AAGTCAAACC GGAAGACAAA AAGACACCTA CAAACGACTT TCGCGCTCCG
AACGCGATTG CACCGTGGGA TAAGCGTCAC GCTGTGATGC GGCGACGAAT CGGCAACGAT
GCTTGGCGGC ACGAGGTATA CGCCGGGGTC TATCCGGTAC GTGCGTTGCG CGACCTTCTA
CAAGAGAAGT TCGGGGCGGA CCCAGACTCG TATGACGAAC GTCTCGACAT CGATACCGCA
CTGTTTTGCC TATCAGTAAC GCATGACGGT CGCGTGCTGT TTGACAACGC TGTGCTTTCG
ACCTGCGCGT GGGCCTGGGG CAGGACGATT TCGCCGGGAC CTAGCGCATC CAATTGGCTG
GAGGGCTACG CCGAGTTTGC AAAGAAATTC GACTCGCAGC TACGTCAGGA ACTGGCACTC
GAGGAAGGCG ACGAGGCGGG TCATAAGCTG CAAGCCGATG GCATCAGCGT CGGACGCCCG
GTGACTCTAG GGGATATCGG AAAGGTATCT GCTTGGCTGC TCCGCGAGTT ACATATTGAA
ATGCCGGAGA TATCGGACGG CATGCGTATT TCGTCTCGCC GGGTGCCTGA GCGATACGCC
TACGAAGCTG ATGGAGCGGA CTTCCTCAAC AGCTTCTTCA TGGACGACCT GAGCTTGGTC
GCGAGCCAGG TCGAGGCAGG TAACGTCGGC CCCGCATTGC ATGAATATCT TGCCGCCGAC
GGTGCAGTGG ACGAATCGAG ACGTGTAGAT GTTCGGCAGA AGCTTGCCCT GCCTTTCCAT
TCGCTGGCGC CCGAAGTGTT TCCTCATGGT AGGTGGCCCA GCAAAGGACA TCATCCACTC
GTCTATGGCC AACAGTTCGC CATTAACCAA CTACTCGAGC AAGTAGAACA AACAGGAGGA
CTGTTTGGCA TCAACGGCCC TCCCGGCACG GGCAAAACAA CACTCTTGCG CGACCTCGTA
GCGTCGGTCG TCGTTTCGCG CGCATTAGCT CTGAGCAAAC TCAGCTCGCC CGCGCAGGCG
TTTACCGGCG TGGCCAGCAT GAAGGCTCAA GATAAAGAGC GAACCGTCAA GCTCTGGAGC
GACGCACTAT CTGGATTCGA AATCGTCGTT GCATCGGCAA ACAATGGCGC AGTCGAAAAC
GTTACCCTCG ATATTCCTGG CATCGATGCA GTCGATGCAA GCTGGGCCCA AGGTTTCGAC
TATTTCAGCG AATTCGCATC ACGGGTCATC GAAAAGCCAG CGTGGGGACT GCTCGCCGCG
CGCCTTGGAA GCAAGGCCAA CCGTGCGATT TTCAGGAAGC GATTCTGGCA AGACGAGTCA
CGCGAGTCGT CAGAGGCATC TGGCGGAGAT GGCGCTGAGA AGAAGCCGGG GTTTTCCAGT
TGGCTTTATT CCCAAAATTC AGCCCTCATA GACTGGAGAG CGGCGAAGAC GAGCTTTCAG
CAAGCGCTTG ATGCTGAAAG GAAGCTTCGA GCACAACGAC AGTCGTGGTT TGAGCGTATT
GGCGAGCTCG CCAAGGCGCT GGCGCGCGAG AAGGGATTTG CGGCCGAGGC GGAGCGTCGG
CAGCAGGCCG AGATTAATTC GGCGATTGCA GAGGAGGCGG CCGCCGCTGA ACACGAACGA
GCGCGCATCG AACACGAGAG CGCTTCGGCG ACCTTGGCCT CTCATGCCAG CAATCGACCG
GGCATTATTC GAGTCGTATT CACTCTCGGA AGAGCGTATA GGAACTGGAA CGCAAGGAGT
CGGGAACTCG CAACGGTAGA GCGCGAGGCC AGAAAAAGCA AGCTGGCAGC GCAAGAGCTT
GCAGATGCCA TGGTGGAAAT CCAGGAGGCT TCAACGGGCT TTCGTACTGC GGCCGAGAGG
ACCCTGGCAA AGGAGAGAGA AGTCGTCGAG CGGCTACGCA AATCTCTGGC TGAAGCTAAG
CAAGTTCTTG GAGAACACTT TCCCTCCTTT GCGACGTGGC ATACCGATGA TGTCGGACGC
GAGAAAAGTT CTCCGTGGGT CGACCCCGCA TGGAATGCTG CGCGGACACG CGTCTTCATG
GAAGCCTTGA ATCTCCACAA GGCGTTCGTC ATTTCGCAAG CGGCGGATAT CGGGAAAAAC
TTAACCGCGC TATTCGACGT ACTTCAGGGG AACGTGCCGG CGGACGCTGC GCATGCTGCT
GTACGCGCGG CATGGCAGAC ACTCTTTTTC ATAGTCCCTG TAGTCTCCAC GACGTTCGCT
TCACTTCCTC GGTTGTTCGA ACATCTTGGT AGAGAAGAGC TGGGATGGCT CCTCATCGAT
GAGGCTGGTC AGGCCGTCCC TCAGAGCGCC GTTGGCGGAA TATGGCGTGC AAAGCGAGCG
ATTGTCGTTG GGGACCCCCT GCAGCTCGAG CCCGTTCTCA CCATTCCATT CAGCGCGCAG
CAGGCATTGC GCGGCAAGTT CGACGTGAGC GAAACGTGGC TTCCGGGTCG GCTTTCCACG
CAAAAGCTCG CGGACCGCGT CGCGACAGTC GGGACAGTAT TGGTCGACCA CGAGCGCAAA
CCGTTATGGG TCAGCTCGCC GTTGCGCGTG CATCGTCGTT GCGATGAAGA GATGTTCCGC
ATATCAAACA AGATTGCGTA CAACGACATG ATGGTGTTCG GTACAGAAGG CAGGAAACCA
TTCCACCTGC CACCTTCTGC GTGGATACAC GTCGAAAGCG CTGACGCTGA AGGCCACTGG
ATACCGGCGG AAGGAGAGAT GGCATTGTCC ATACTGCGTG ATGTCGCGCC AGAAACCCGC
GACAAAATCT ACGTGATTTC GCCCTTTCGG GACGTCGTTC GCGGACTCGA GTCGCTGCTA
CATAAAGCAA AGCTTTCGAA CGTCGAGGTC GGAACGATTC ATACGGTCCA AGGCAAGGAG
TCTGACGTCG TGCTCCTGGT GCTGGGCGGA AATCCGAAGA GGCCTGGTGC GAAGGCTTGG
GCGTCCAAAA AGCCAAACCT GCTGAACGTC GCAGTCAGTC GCGCCAAGCG AAGAATCTAC
GTGATAGGCA ATCGGAGGGT CTGGGAGCAA TTCGACAACT TCGATAAGTG TTCGGCCATC
CTCGGGCCGC AAAGCGAGTG GGTTCCACCT GTTCCGTCTT ACCTTCAATA A
|
|---|
| Protein sequence | MTDTASVLRY WRAIEIFCPQ SVPKVKPEDK KTPTNDFRAP NAIAPWDKRH AVMRRRIGND
AWRHEVYAGV YPVRALRDLL QEKFGADPDS YDERLDIDTA LFCLSVTHDG RVLFDNAVLS
TCAWAWGRTI SPGPSASNWL EGYAEFAKKF DSQLRQELAL EEGDEAGHKL QADGISVGRP
VTLGDIGKVS AWLLRELHIE MPEISDGMRI SSRRVPERYA YEADGADFLN SFFMDDLSLV
ASQVEAGNVG PALHEYLAAD GAVDESRRVD VRQKLALPFH SLAPEVFPHG RWPSKGHHPL
VYGQQFAINQ LLEQVEQTGG LFGINGPPGT GKTTLLRDLV ASVVVSRALA LSKLSSPAQA
FTGVASMKAQ DKERTVKLWS DALSGFEIVV ASANNGAVEN VTLDIPGIDA VDASWAQGFD
YFSEFASRVI EKPAWGLLAA RLGSKANRAI FRKRFWQDES RESSEASGGD GAEKKPGFSS
WLYSQNSALI DWRAAKTSFQ QALDAERKLR AQRQSWFERI GELAKALARE KGFAAEAERR
QQAEINSAIA EEAAAAEHER ARIEHESASA TLASHASNRP GIIRVVFTLG RAYRNWNARS
RELATVEREA RKSKLAAQEL ADAMVEIQEA STGFRTAAER TLAKEREVVE RLRKSLAEAK
QVLGEHFPSF ATWHTDDVGR EKSSPWVDPA WNAARTRVFM EALNLHKAFV ISQAADIGKN
LTALFDVLQG NVPADAAHAA VRAAWQTLFF IVPVVSTTFA SLPRLFEHLG REELGWLLID
EAGQAVPQSA VGGIWRAKRA IVVGDPLQLE PVLTIPFSAQ QALRGKFDVS ETWLPGRLST
QKLADRVATV GTVLVDHERK PLWVSSPLRV HRRCDEEMFR ISNKIAYNDM MVFGTEGRKP
FHLPPSAWIH VESADAEGHW IPAEGEMALS ILRDVAPETR DKIYVISPFR DVVRGLESLL
HKAKLSNVEV GTIHTVQGKE SDVVLLVLGG NPKRPGAKAW ASKKPNLLNV AVSRAKRRIY
VIGNRRVWEQ FDNFDKCSAI LGPQSEWVPP VPSYLQ
|
|---|
| |