Gene Bamb_5199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5199 
Symbol 
ID4314090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2231604 
End bp2232383 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content67% 
IMG OID638153042 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_777082 
Protein GI115359944 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCCA AGATTGACGG TCGCCTTGCC GGCAAGGTCG CCATCGTGAG CGGCGGCGCG 
GGCGGATGCG GCGCCGCCGC GTCCGAGCTG TTCGCCGCGC AGGGCGCGAA GGTGGCGATC
ATCGACCGCG ACGGCGACGC TGCCGACACG CTCGCGTCGC GGTTGCGCGA TGCCGGCCTG
CAGGCGATCG GCCTGCAAGC CGACGTGTCG AAGCAGCCGG ACGTGCGGAA CGCGGTCGAT
GCGGCCCACA AGCAGTACGG CAACGCGGAC ATCCTGTTCA ATCATGCGGG CACGCTGATC
GTCAAACCGT TTCTCGACAT CGAGGAGTCG GAATGGGACT GGCTGATGGG CGTGAACGTG
AAGAGCATGT TCCTGATGAC GAAGGCGGTG CTGCCGCAGA TGCTGGAAAA AGGGCGCGGC
AGCATCGTGT GTACGTCGTC GATCTCGGCC GTCTTCGCGA CGCCCGGCGA GGTGCTGTAT
GACGCGACCA AGGGCGCATG CCAGATGTTC GCGCGGGCGA TCGCCGTCGA ATACCGCGAC
CGCGGCATTC GCTGCAACGC GCTGGCGCCT GGCTTCATCC GCACGCCGCA CGGGATGCGC
GAGCTGAAGG ATCTGCAGGC GATGGGCGTG GACGCGACCG AGGCGGCCAT CGCGGTGCAG
CAAGGCCGCC TGTGCGAGCC GTCGGAAGTG GCCGCGGCCG CGCTGTTCCT TGCGTCCGAC
GAATCGAGCT TCGTCAACGG CACCCAGCTA TTCGTCGACA ACTGTTTTTC CGCCGTTTAG
 
Protein sequence
MNAKIDGRLA GKVAIVSGGA GGCGAAASEL FAAQGAKVAI IDRDGDAADT LASRLRDAGL 
QAIGLQADVS KQPDVRNAVD AAHKQYGNAD ILFNHAGTLI VKPFLDIEES EWDWLMGVNV
KSMFLMTKAV LPQMLEKGRG SIVCTSSISA VFATPGEVLY DATKGACQMF ARAIAVEYRD
RGIRCNALAP GFIRTPHGMR ELKDLQAMGV DATEAAIAVQ QGRLCEPSEV AAAALFLASD
ESSFVNGTQL FVDNCFSAV