Gene Bamb_5194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5194 
Symbol 
ID4314085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2224012 
End bp2225826 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content68% 
IMG OID638153037 
Productendonuclease/exonuclease/phosphatase 
Protein accessionYP_777077 
Protein GI115359939 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.337928 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTCGA CAATCCGCCT GTTTGCCCCG CTATTGCTGC TGCCCACGCT TGCCGCGCCG 
GTTCTCGCGG CGACCGCCGC CCCCGTCAGC CCGAACTGCG GCGGTAGCAC GACGCCGATC
GCCGACATCC AGGGGCCGGG CGCGCCGTCG CCGCTCGCCG GCCAGAACGC GTCGATCGAA
GCGGTCGTCA CGGCCGATTT CGGCGGCACG TACGGCTTCG GCGGCTTCTT CGTCCAGCAG
GCCGACCCGC AGCGCCGCAA CCAGCCGGGC GTGTCCGAAG GTCTGTTCGT CTATGCGCCG
AAAGTGCGCG CGAAGGCCGG AGATCTCGTG CACGTGACGG GCAAGGTCGA GGAGAAATAC
GGGCAGACGC AGCTCACGCT GTCGGGCGCG ATCGCGGTGT GCGCGAACGG CCAGACGGTC
ACGCCGGCGA CGCTCACGCT GCCGGTCGAC AGCCCGAACG CGTTCGCCGC GTATGAAGGG
ATGCTGGTGC GCCTGCCGCA GACGCTCACC GTCACCGACA ACTACGAGCT CGGCCGTTAC
GGCAGCACGA TGCTGAGCAA CGGCCGGCTG CGCACGCCGA CGAGCGTGGT GTCGCCGTCG
CAGGCGCAGA CGCAGATCGA TGCGAACGCA CGCAATCGGT TGATTCTCGA TGACGGCTCG
AACAAGCAGA ACCCGGCGAG CGTGCCGTAT CCGGCGCCGG CACTGTCGGC CGCGAACACG
CTGCGCTCGG GCTACACGGT GCGCAACGTC GAAGGCGTGC TCGAGGTGCG CTACGGCGCC
TGGCGCGTGC AGGCGCTGCC GGGCGCGGCC GCGCCGACGT TCGACACGCG CGCGAACCCG
CGCACCAACG CACCGGCACG CGATCCGAAA TCGAACCTGC GCGTCGCGTC GTTCAACGTC
CTCAACTACT TCAACGGCAA CGGCATGGGC GGCGGCTTCG ACGATCCGAA CAACCGCGGC
GCGAAGAACT ATCAGGAATT CCAGCGTCAG GAAGCGAAGA TCGTCAGCGC GCTGAAGGCG
CTCGATGCCG ACGTGATCGG CCTGATGGAA ATCCAGAACA ACGGCTACGG CGAACTGAGC
GCGGTGCGGC AGCTCGCGGC GAAGCTCGGC AGCAACTGGC GCGTGGTCGA TCCGGGCACG
TCGCGCCTCG GCGGCGACGC GATCACGGTC GCGATGATCT ACGACAGCCG CACGGTCGAA
CCGGTCGGCC GCGCGTCGAC GCTCGCGATC GACGACAAGA ACCGCCAGCC GCTCGCACAG
TCGTTCCGCC GCGTCGGCGG CAACAAGCAG GCGCTGACGA TCGCGGTCAA CCACCTGAAG
TCGAAGAACT GCCCGGACGC GGCGAACGAC GACCTCGACC AGGGCGACGG TCAGGGCTGC
TGGAACCCGA CGCGCACGCG CGCGGCGGCG AAGCTGGCGG ACTGGCTCGC CGGCACGCCG
ACGGGCGTCG CGGGGCAGGG CACGCTGCTG ATCGGCGACT TCAACAGCTA CACGTATGAA
GACCCGATCC GCCTGCTCGA AGCGCGCGGC TACCGCAACC TCGTGTCGCG CTGGATCGGC
GCGAACGCGT ACAGCTACGT GTACAACGGC GAAGCCGGCT ACCTCGATCA CGCGCTCGCA
TCGCTGCCGC TCGCGTCGCA CGTGAAGGCC GTGCACGAAT GGCACATCAA CGCAGATGAG
CCGCTCGCGC TGCAGTACAC GCTCGCGTAC AAGTCGACCG AGCAGCAGAA GACGTACTAC
GCGCCGGATG CGTATCGCTC GTCGGATCAC GATCCGGTGC TGATCGATAT CGCGCTGCCG
GGCGGCGGGC GCTGA
 
Protein sequence
MRSTIRLFAP LLLLPTLAAP VLAATAAPVS PNCGGSTTPI ADIQGPGAPS PLAGQNASIE 
AVVTADFGGT YGFGGFFVQQ ADPQRRNQPG VSEGLFVYAP KVRAKAGDLV HVTGKVEEKY
GQTQLTLSGA IAVCANGQTV TPATLTLPVD SPNAFAAYEG MLVRLPQTLT VTDNYELGRY
GSTMLSNGRL RTPTSVVSPS QAQTQIDANA RNRLILDDGS NKQNPASVPY PAPALSAANT
LRSGYTVRNV EGVLEVRYGA WRVQALPGAA APTFDTRANP RTNAPARDPK SNLRVASFNV
LNYFNGNGMG GGFDDPNNRG AKNYQEFQRQ EAKIVSALKA LDADVIGLME IQNNGYGELS
AVRQLAAKLG SNWRVVDPGT SRLGGDAITV AMIYDSRTVE PVGRASTLAI DDKNRQPLAQ
SFRRVGGNKQ ALTIAVNHLK SKNCPDAAND DLDQGDGQGC WNPTRTRAAA KLADWLAGTP
TGVAGQGTLL IGDFNSYTYE DPIRLLEARG YRNLVSRWIG ANAYSYVYNG EAGYLDHALA
SLPLASHVKA VHEWHINADE PLALQYTLAY KSTEQQKTYY APDAYRSSDH DPVLIDIALP
GGGR