Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5058 |
Symbol | |
ID | 4313949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 2075820 |
End bp | 2077967 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638152901 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_776941 |
Protein GI | 115359803 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00424318 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACGAG TATTGCACCC GGCACGACGC GCCGTACTGG CCGCCGTTGC GTGCCAGCCG ATCATGGTTG TCGCGGCCTT CGCGCAGGAA AACACCGCCG CGCCGACGAG CGCGACGACC GACATGTTGC CGGCCGTCTC GGTGAACGCG AGCGCGGTCC GTGATCCGGG CGAAGGCTAC AACCCGACCA ACGCGGTCAG CGCCACCCGG ATCGACGCGC CGCTGCGCGA CATCCCGCAG ACGGTGAACG TGGTCACGGC CGAAGTGATG CGTGATCAGC ACGCCAATTC CCTGCAGGAC GTGTTGAAGA ACGTCGCGGG CGTCGGGTTC TCCACCGGCG ACGGTCAGCG CGACCAGGTC ACCATTCGCG GCTTCTCCGC GATTGCCGAC CAGTTCGTCG ACGGCATTCG CGACGATGCG CTCTATTTCC GCGATCTGTC GAACGTCGAT CGCGTAGAAG TCGTCAAGGG CCCTGCCGCC GTTCTTTATG GCCGAGGTTC TTCAGGTGGA CTAATCAACC GTGTGACGAA AAAGCCCGGA GTCGACGTCA CCAACCTGGG TGTCAGCTAC GGTTCGTGGG CCGACCGTCG GGTCGAAGCC GATGTCGGCC GCGTGCTCGC GAACGGCGCG GCCGCGTTCC GGATCACCGG CGCGCACGAG GAAGCCAAGA GCTATCGGTC GCAGCAGTTT CTGAATCGCA CGGCGGTCGC GCCGTCGTTC GAATTCCGCA TCGCGCCGAA GACGACGGTA TTGCTGCAGG CCGACTACCT CGAAGATCGC CGTGTGACGG ACTTCGGCAT CCCGGCCTAC AAGGGACGGC CGGTCGACGT GCCGGCATCC GCCTATTACG GCGCGGCGAA CGCCGGCGAG GTCGACTATT CGCGATCGCG TGTCTATTCG AGCACCGCGA CGATCAAGCA CGAGTTCAAC GAACAGTGGT CGATCCGCAA TGCCACTCGC TACTATCACT ATTCGCTCGA CCGGAACAAC ACGCTCGTCG GCAGCGTCAA CGAAGCGAGC CGGACGTTCA CGCTGAATCA CGGCAACGTC TATCGCGAGG AACACGGCTG GTTCAACCAG ACCGATCTCA CGCAAAAGGC CACGCTGTTC GGCATGAAGC ACGAGTTGCT GTACGGGATG GAAATCGGCC AGCAGAACAA GGATCTCGTC AATTATTCGG CTCCCGTCGC CGGCGCGAAC GGCAAGCCGA TGAATTTCGA CCTGTTCGCG CCGGCGCTGC CGACGCTGCC GCTGCACACG TCGACCACGC CGGCCACCAA CAACCTCGGC ATCTTCAAGA CGCTCGGGTT CTACACGCAG GACCTGATCA GCTTCAACGA TCAGTGGAAG GCGCTGGTCG GCATCCGCTA CGACCGCTTC GAGCAGGAGA CGCTCGACCG CCGGCCCAAA CAGCCGGGCC TGTCGCGTAC CGACACCGCA TGGAGCCCGC GCCTGGGCCT GGTCTGGCAG CCGACCCGGA CGCAGTCGTA CTACGTGTCG TGGAGCCGCT CGTTCCAGCC GTCGGGCGAG GCGTTCTCGC TCGCGGCCAA CAATGCGGAG CTCGCGCCGG AAATCACGAC CAATACCGAG ATCGGTGCGA AGTACGACTG GCTCGGCGGC AAGGCCACCA CGACGATCTC GGTGTTCCGG CTGGATCGCA GCAACATCAA GATCACCAAC GGAGCCGGCA CGGCGCTGAT TCCGATCGGC GAGCAGCGGA CCGACGGCGT GGAACTCAGC GGCGCAGCCG AGCTCAGCCA CGGCTGGCGC GTGCTGGCAG GCTACGCGTA CCTGGATGCC ACCGTCACGA ATTCGACCGC TGCATTGCAG GGCAAGCGGG CCACGCTCAC GCCGCGTCAC TCCGGCAATC TGTGGCTGAC CAAGAATCTC GGCAACGGCT TCGGCGTTGG CGGCGGCCTG AACTTCGTCG GCGCGCGGAT GGCCGATCCG CAGAACACGG TGACCTTGCC GGGTTACGTG ACGGCCGACA TGATGGCCTG GTACGCGCGC GGCCCGATGT CGCTCCAGTT GAACCTCTAC AACCTGTTCA ACAAGGGCTA TATCGTCTCG GCACACGGCT CGAACGCGAA CCTCAACCTG CCGGGGGCAC CGCGCAGCGT CATGGCGACG TTGCGATACG AGATGTAA
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Protein sequence | MRRVLHPARR AVLAAVACQP IMVVAAFAQE NTAAPTSATT DMLPAVSVNA SAVRDPGEGY NPTNAVSATR IDAPLRDIPQ TVNVVTAEVM RDQHANSLQD VLKNVAGVGF STGDGQRDQV TIRGFSAIAD QFVDGIRDDA LYFRDLSNVD RVEVVKGPAA VLYGRGSSGG LINRVTKKPG VDVTNLGVSY GSWADRRVEA DVGRVLANGA AAFRITGAHE EAKSYRSQQF LNRTAVAPSF EFRIAPKTTV LLQADYLEDR RVTDFGIPAY KGRPVDVPAS AYYGAANAGE VDYSRSRVYS STATIKHEFN EQWSIRNATR YYHYSLDRNN TLVGSVNEAS RTFTLNHGNV YREEHGWFNQ TDLTQKATLF GMKHELLYGM EIGQQNKDLV NYSAPVAGAN GKPMNFDLFA PALPTLPLHT STTPATNNLG IFKTLGFYTQ DLISFNDQWK ALVGIRYDRF EQETLDRRPK QPGLSRTDTA WSPRLGLVWQ PTRTQSYYVS WSRSFQPSGE AFSLAANNAE LAPEITTNTE IGAKYDWLGG KATTTISVFR LDRSNIKITN GAGTALIPIG EQRTDGVELS GAAELSHGWR VLAGYAYLDA TVTNSTAALQ GKRATLTPRH SGNLWLTKNL GNGFGVGGGL NFVGARMADP QNTVTLPGYV TADMMAWYAR GPMSLQLNLY NLFNKGYIVS AHGSNANLNL PGAPRSVMAT LRYEM
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