Gene Bamb_5001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5001 
Symbol 
ID4313892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2021395 
End bp2022516 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content71% 
IMG OID638152844 
Productalcohol dehydrogenase 
Protein accessionYP_776884 
Protein GI115359746 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases 
TIGRFAM ID[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGCAC TTCAATGGCA CGGCCCACGC GACCTCCGCG TGGTCGATCT CGACACGCCA 
CGCGCGGGGC CCGGCGAGGT CCGCATCGCG GTCGCGTATT GCGGCATCTG CGGCAGCGAC
CTGCACGAAT ATGCGGACGG CCCGCACGCG ATTCCGGTCG ACACGCCGCA TCCGCTGTCC
GGCCGCACCG CACCGCTCAC GCTCGGTCAC GAGTTCTGCG GCACCGTCGT CGAAGTCGGC
GCGGGCGTGA CGACGCTGAC CCCGGGCGAC CGCGTCGCGG TCGAGCCCGA GTATCACTGC
CACCAGTGCG CGTACTGCCG CTCGGGCTCG TACAACCTGT GCGTATCGAT GGGCTTCGCC
GGCCTGATGG GCGATGGCGG GATGGCCGAC TTCGCGGTCG TGCCGGCCTA CATGCTGCAT
CGGCTCCCTG ACGACATCAG TCTCGAACAG GCCGCGGTGA TGGAACCGGC GGCCGTCGCG
CTGCATGCGC TGCGGCGCGG CGAGCTGCGG CTCGGCGACA CCTGCGCGGT GTTCGGCCTC
GGGCCGATTG GCCTGCTGCT GATCATGCTC GCGAAGCTGC AGGGCGCGAC GACCATCGTC
GCGGTCGACG TGTCGCCGGA GCGGCTCGCC GCGGCCGCGC GCTTCGGCGC GACGCACGCG
TTCGACGCGC GCTCGCTCGA CGCGCCGGTG CTGCGCGACG CGATTCGCGA GGCGGCGGGC
GGGCTCGGCG TCGACGTGAG CTTCGAGGCG GCCGGCCTGC CGGCCACGTT CGAGGCCGCG
ATGCAGGGGC TGCGCAAGGG CGGCCGCCTC GTGATGGTCG GCCTGATGCC GCATGCGGGT
TTCGATGCGT TCCGCGCGGT CAACGACGAG CTGACCTTCA CGGCGAGCGT CGGCTACCGG
CACGTGTACG AAGACCTGCT GCGGCTGATC GGGTCGGGCG CGCTCGATCT CACGTCGATC
GTCACGCGCA CGGTCGCGCT CGACGATGCC GTCGCCGACG GCTTCGACGC GCTGCTCGCC
GATCGCGCGC AGATCAAGAT CCTGGTTGCG CCGCCGCGCC GTCATGCGCG CCGTCCTCAC
ACCGTCGGGA GCATCGAGCA TGAGCCGACC CTGGTCGTTT GA
 
Protein sequence
MRALQWHGPR DLRVVDLDTP RAGPGEVRIA VAYCGICGSD LHEYADGPHA IPVDTPHPLS 
GRTAPLTLGH EFCGTVVEVG AGVTTLTPGD RVAVEPEYHC HQCAYCRSGS YNLCVSMGFA
GLMGDGGMAD FAVVPAYMLH RLPDDISLEQ AAVMEPAAVA LHALRRGELR LGDTCAVFGL
GPIGLLLIML AKLQGATTIV AVDVSPERLA AAARFGATHA FDARSLDAPV LRDAIREAAG
GLGVDVSFEA AGLPATFEAA MQGLRKGGRL VMVGLMPHAG FDAFRAVNDE LTFTASVGYR
HVYEDLLRLI GSGALDLTSI VTRTVALDDA VADGFDALLA DRAQIKILVA PPRRHARRPH
TVGSIEHEPT LVV