| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4961 |
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| Symbol | |
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| ID | 4313852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1977767 |
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| End bp | 1978363 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638152804 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_776844 |
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| Protein GI | 115359706 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02943] RNA polymerase sigma-70 factor, TIGR02943 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000319566 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0167527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCCG CGTACGACGA TCCTCCCTAT CTCACGCAAC TGCGGCGCGA CCTGCTGCGC
TTTGCGCGAC TCCAGCTACG CGATGCCGAT GCGGCCGAGG ATGCCGTGCA GGAAGCGCTG
ACCGCTGCGT GGTCGCACGC GGGCGAGTTC GCGGGACGGT CCGCGCACAA GACCTGGGTG
TTCGGGATCC TGCGCAACAA GCTAATCGAC ATCCTGCGCG CGCGGCAGCG GACGGTGAGC
CTGTCCGCGC TCGATGCGGA GCTCGACGGC GAATCCGCGC TCGATCGCGA GCTGTTCAAG
GAAAACGGGC ATTGGGCCGC GCATACGAAG CCGCGGCCGT GGCCGCGCCC CGAGACGCTA
TTGCAGCAAC AGCAGTTCTG GACGCTGTTC CAGGTGTGTC TCGATCACCT GCCGGAACAC
ATCGGGCGCG TGTTCATGAT GCGCGAATTC CTCGATGTCG AGATCAACGA CATCTGCACC
GAACTGACGT TGACGACGAA CCATTGCAGC GTGCTGCTGT ATCGGGCGCG CACGCGCCTG
CGCACCTGCC TCAGCGAAAA AGGACTGACG ACCGAAGATG CTGCCGGGGA AATGTAG
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| Protein sequence | MPSAYDDPPY LTQLRRDLLR FARLQLRDAD AAEDAVQEAL TAAWSHAGEF AGRSAHKTWV
FGILRNKLID ILRARQRTVS LSALDAELDG ESALDRELFK ENGHWAAHTK PRPWPRPETL
LQQQQFWTLF QVCLDHLPEH IGRVFMMREF LDVEINDICT ELTLTTNHCS VLLYRARTRL
RTCLSEKGLT TEDAAGEM
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