| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4953 |
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| Symbol | |
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| ID | 4313844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1969547 |
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| End bp | 1970395 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638152796 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_776836 |
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| Protein GI | 115359698 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.202978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0913001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGTTT CCAATCTCGT CGTGGACGAA CAAGAAACCG ACGCCGCTGC CGTCACATCG
GGCAGTTCTT TCTATTTGGC GATGCGCATC CTGCCGGCGG TGCAGCGCGA CGCGATGTTC
CAGGTCTACG CGTTCTGCCG CGCGGTCGAC GACATCGCCG ACAGCGACCT GCCGCGCGCC
GAGCGCAACG CGGGCCTCGA TCGCTGGCGC GCGGACATCG ACGCGTGCTT CGCCGGCCAG
CCGCCGCGCC ATCTGGTCGC GCTCGAGCGC GAGATCCGCG CGTTCGACCT GAAGCGCGAG
GATTTCCACG CGATGATCGA CGGAATGGCG ATGGACGCCG CCGAGGACAT CTGCGCGCCG
GACGAACCGA CGCTCGACCT GTTCTGCGAT CGCGTGGCGA GCGCGGCCGG CCGTCTGTCG
GTGAGGATTT TCGGGATCCC GGAAGCGCAA GGCATCGCGC TGTCGCATCA CCTCGGCCGC
GCGTTGCAGC TGACGAACAT CCTGCGCGAC ATCGACGACG ACGCGGCGAT CAACCGTTGC
TACCTGCCGC GCGAGCTGCT CGCGCGCGAA GGCATCGCGA TCACCGATCC GGCGACGATC
GTGCGCGACC CGGCGCTGCC GCGCGTGTGC GCGACGCTGG TCGAGCGCGC GCTCGAGCAT
TTCCGCGCGG CGGACGCCGT GATGGATACC TGCACGCGTG CGCAGGTGAA GGCGCCGCGC
ATCATGTCGG GCGCGTATCG CTGCATTCTG GAGGCCGCGG TCGCGCGCGG CTTCGCCGCG
CCGCGCGCGC CGCTGCGCAA GCCGAAGGCG CGCATGCTGA TGATCGCCGC GCGCTACGCG
CTGTTCTGA
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| Protein sequence | MAVSNLVVDE QETDAAAVTS GSSFYLAMRI LPAVQRDAMF QVYAFCRAVD DIADSDLPRA
ERNAGLDRWR ADIDACFAGQ PPRHLVALER EIRAFDLKRE DFHAMIDGMA MDAAEDICAP
DEPTLDLFCD RVASAAGRLS VRIFGIPEAQ GIALSHHLGR ALQLTNILRD IDDDAAINRC
YLPRELLARE GIAITDPATI VRDPALPRVC ATLVERALEH FRAADAVMDT CTRAQVKAPR
IMSGAYRCIL EAAVARGFAA PRAPLRKPKA RMLMIAARYA LF
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